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NM_000518.5(HBB):c.316-124A>T AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 10, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002222650.1

Allele description [Variation Report for NM_000518.5(HBB):c.316-124A>T]

NM_000518.5(HBB):c.316-124A>T

Genes:
LOC110006319:beta-globin gene 3' regulatory region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.316-124A>T
HGVS:
  • NC_000011.10:g.5225850T>A
  • NG_000007.3:g.71766A>T
  • NG_046672.1:g.3785T>A
  • NG_053049.1:g.2171T>A
  • NG_059281.1:g.6222A>T
  • NM_000518.5:c.316-124A>TMANE SELECT
  • LRG_1232t1:c.316-124A>T
  • LRG_1232:g.6222A>T
  • NC_000011.9:g.5247080T>A
  • NM_000518.4:c.316-124A>T
Links:
dbSNP: rs1184042209
NCBI 1000 Genomes Browser:
rs1184042209
Molecular consequence:
  • NM_000518.5:c.316-124A>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002500301Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Mar 10, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Presentation of two new mutations in the 3'untranslated region of the β-globin gene and evaluating the molecular spectrum of thalassemia mutations in the Mediterranean region of Turkey.

Arpaci A, Gul BU, Ozcan O, Ilhan G, El C, Dirican E, Elmacioglu S, Kaya H.

Ann Hematol. 2021 Jun;100(6):1429-1438. doi: 10.1007/s00277-021-04509-9. Epub 2021 Apr 13.

PubMed [citation]
PMID:
33851260

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV002500301.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Variant summary: HBB c.316-124A>T is located at a position not widely known to affect splicing. 4/4 computational tools predict no significant impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The variant allele was found at a frequency of 3.2e-05 in 31404 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.316-124A>T has been reported in the literature in individuals affected with Hemoglobinopathy. These report(s) do not provide unequivocal conclusions about association of the variant with mild Hemoglobinopathy (beta+) . To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Two clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. One laboratory classified the variant as likely benign, and one laboratory classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as VUS-possibly benign.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024