NM_000504.4(F10):c.1351A>C (p.Ile451Leu) AND Hereditary factor X deficiency disease

Germline classification:: Likely pathogenic (1 submission)
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002222132.2

Allele description [Variation Report for NM_000504.4(F10):c.1351A>C (p.Ile451Leu)]

NM_000504.4(F10):c.1351A>C (p.Ile451Leu)

Gene:

F10:coagulation factor X [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q34

Genomic location:

Preferred name:

NM_000504.4(F10):c.1351A>C (p.Ile451Leu)

HGVS:

NC_000013.11:g.113149401A>C
NG_009258.1:g.31603A>C
NM_000504.4:c.1351A>CMANE SELECT
NM_001312674.2:c.1219A>C
NM_001312675.2:c.*342A>C
NP_000495.1:p.Ile451Leu
NP_001299603.1:p.Ile407Leu
LRG_548t1:c.1351A>C
LRG_548:g.31603A>C
NC_000013.10:g.113803715A>C
NM_000504.3:c.1351A>C

Protein change:

I407L

Links:

dbSNP: rs369872236

NCBI 1000 Genomes Browser:

rs369872236

Molecular consequence:

NM_001312675.2:c.*342A>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
NM_000504.4:c.1351A>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001312674.2:c.1219A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary factor X deficiency disease
Synonyms:: STUART-PROWER FACTOR DEFICIENCY; Congenital factor X deficiency
Identifiers:: MONDO: MONDO:0009212; MedGen: C0272327; Orphanet: 328; OMIM: 227600

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002499583	ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic	unknown	clinical testing	PubMed (2) [See all records that cite these PMIDs] 34355501, 25741868

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002499583

ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic

unknown

clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

GoldVariants, a resource for sharing rare genetic variants detected in bleeding, thrombotic, and platelet disorders: Communication from the ISTH SSC Subcommittee on Genomics in Thrombosis and Hemostasis.

Megy K, Downes K, Morel-Kopp MC, Bastida JM, Brooks S, Bury L, Leinoe E, Gomez K, Morgan NV, Othman M, Ouwehand WH, Perez Botero J, Rivera J, Schulze H, Trégouët DA, Freson K.

J Thromb Haemost. 2021 Oct;19(10):2612-2617. doi: 10.1111/jth.15459. Epub 2021 Aug 5. Erratum in: J Thromb Haemost. 2023 Apr;21(4):1067. doi: 10.1016/j.jtha.2023.01.021.

PubMed [citation]

PMID:: 34355501
PMCID:: PMC9291976

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From ISTH-SSC Genomics in Thrombosis and Hemostasis, KU Leuven, Center for Molecular and Vascular Biology, SCV002499583.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (2)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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