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NM_002230.4(JUP):c.1498-6del AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Jun 13, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002165288.6

Allele description [Variation Report for NM_002230.4(JUP):c.1498-6del]

NM_002230.4(JUP):c.1498-6del

Gene:
JUP:junction plakoglobin [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q21.2
Genomic location:
Preferred name:
NM_002230.4(JUP):c.1498-6del
HGVS:
  • NC_000017.11:g.41758882del
  • NG_009090.2:g.32837del
  • NM_001352773.2:c.1498-6del
  • NM_001352774.2:c.1498-6del
  • NM_001352775.2:c.1498-6del
  • NM_001352776.2:c.1498-6del
  • NM_001352777.2:c.1498-6del
  • NM_002230.4:c.1498-6delMANE SELECT
  • NM_021991.4:c.1498-6del
  • LRG_401:g.32837del
  • NC_000017.10:g.39915128del
  • NC_000017.10:g.39915134del
Links:
dbSNP: rs1555599887
NCBI 1000 Genomes Browser:
rs1555599887
Molecular consequence:
  • NM_001352773.2:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352774.2:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352775.2:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352776.2:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352777.2:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_002230.4:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]
  • NM_021991.4:c.1498-6del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Naxos disease (NXD)
Synonyms:
KERATOSIS PALMOPLANTARIS WITH ARRHYTHMOGENIC CARDIOMYOPATHY; PALMOPLANTAR KERATODERMA WITH ARRHYTHMOGENIC RIGHT VENTRICULAR CARDIOMYOPATHY AND WOOLLY HAIR; WOOLLY HAIR, PALMOPLANTAR KERATODERMA, AND CARDIAC ABNORMALITIES; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011017; MedGen: C1832600; Orphanet: 34217; OMIM: 601214
Name:
Arrhythmogenic right ventricular dysplasia 12
Synonyms:
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA, FAMILIAL, 12; Arrhythmogenic right ventricular cardiomyopathy, type 12
Identifiers:
MONDO: MONDO:0012684; MedGen: C1969081; OMIM: 611528

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002339917Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Benign
(Jun 13, 2022) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002339917.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024