NM_000400.4(ERCC2):c.816-28_816-18del AND not provided

This record was updated by the submitter. Please see the current version.

Germline classification:: Likely benign (1 submission)
Last evaluated:: Mar 26, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002129990.5

Allele description

NM_000400.4(ERCC2):c.816-28_816-18del

Gene:

ERCC2:ERCC excision repair 2, TFIIH core complex helicase subunit [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

19q13.32

Genomic location:

Preferred name:

NM_000400.4(ERCC2):c.816-28_816-18del

HGVS:

NC_000019.10:g.45364145_45364155del
NG_007067.2:g.11441_11451del
NM_000400.4:c.816-28_816-18delMANE SELECT
NM_001130867.2:c.744-28_744-18del
LRG_461:g.11441_11451del
NC_000019.9:g.45867395_45867405del
NC_000019.9:g.45867403_45867413del

Links:

dbSNP: rs752660058

NCBI 1000 Genomes Browser:

rs752660058

Molecular consequence:

NM_000400.4:c.816-28_816-18del - intron variant - [Sequence Ontology: SO:0001627]
NM_001130867.2:c.744-28_744-18del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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PREDICTED: Macaca fascicularis dipeptidase 2 (DPEP2), transcript variant X3, mRN...
PREDICTED: Macaca fascicularis dipeptidase 2 (DPEP2), transcript variant X3, mRNA
gi|2739291771|ref|XM_065537615.1|

Nucleotide
p72syk {G insertion nucleotide 92} [human, Jurkat E6-1 J.CaM1 cells, mRNA Partia...
p72syk {G insertion nucleotide 92} [human, Jurkat E6-1 J.CaM1 cells, mRNA Partial Mutant, 1909 nt]
gi|1245835|bbm|379686|bbs|173419|gb 67.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002416251	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Mar 26, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002416251

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Mar 26, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV002416251.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 28, 2024

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