NM_030662.4(MAP2K2):c.706-15_706-14del AND RASopathy

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 29, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002103194.6

Allele description [Variation Report for NM_030662.4(MAP2K2):c.706-15_706-14del]

NM_030662.4(MAP2K2):c.706-15_706-14del

Gene:

MAP2K2:mitogen-activated protein kinase kinase 2 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

19p13.3

Genomic location:

Preferred name:

NM_030662.4(MAP2K2):c.706-15_706-14del

HGVS:

NC_000019.10:g.4099428_4099429del
NG_007996.1:g.29700_29701del
NM_030662.4:c.706-15_706-14delMANE SELECT
LRG_750:g.29700_29701del
NC_000019.9:g.4099426_4099427del

Links:

dbSNP: rs1255196775

NCBI 1000 Genomes Browser:

rs1255196775

Molecular consequence:

NM_030662.4:c.706-15_706-14del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: RASopathy
Synonyms:: rasopathies; Noonan spectrum disorder
Identifiers:: MONDO: MONDO:0021060; MedGen: C5555857

Recent activity

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Croton catinganus (24437)
Nucleotide
Croton pontis (0)
ClinVar
Croton pontis AND (alive[prop]) (0)
Gene
MAG: Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_14 rifcsphigho2_12_sc...
MAG: Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_14 rifcsphigho2_12_scaffold_1790, whole genome shotgun sequence
gi|1085147824|gb|MGXY01000014.1||gn :MGXY01|rifcsphigho2_12_scaffold_1790

Nucleotide
Microbe sample from Burkholderia sp. DHOD12
Microbe sample from Burkholderia sp. DHOD12

biosample

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002383317	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Jul 29, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002383317

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Jul 29, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002383317.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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