ClinVar

NM_017739.4(POMGNT1):c.1629G>A (p.Val543=)

Genes:

POMGNT1:protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [Gene - OMIM - HGNC]
TSPAN1:tetraspanin 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p34.1

Genomic location:

• Chr1: 46190493 (on Assembly GRCh38)
• Chr1: 46656165 (on Assembly GRCh37)

Preferred name:

NM_017739.4(POMGNT1):c.1629G>A (p.Val543=)

HGVS:

• NC_000001.11:g.46190493C>T
• NG_009205.3:g.34813G>A
• NM_001243766.2:c.1629G>A
• NM_001290129.2:c.1563G>A
• NM_001290130.2:c.1200G>A
• NM_017739.4:c.1629G>AMANE SELECT
• NP_001230695.2:p.Val543=
• NP_001277058.2:p.Val521=
• NP_001277059.2:p.Val400=
• NP_060209.4:p.Val543=
• LRG_701t1:c.1629G>A
• LRG_701t2:c.1629G>A
• LRG_701:g.34813G>A
• LRG_701p1:p.Val543=
• LRG_701p2:p.Val543=
• NC_000001.10:g.46656165C>T
• NG_009205.2:g.34813G>A

This HGVS expression did not pass validation

Links:

dbSNP: rs2148172303

NCBI 1000 Genomes Browser:

rs2148172303

Molecular consequence:

• NM_001243766.2:c.1629G>A - synonymous variant - [Sequence Ontology: SO:0001819]
• NM_001290129.2:c.1563G>A - synonymous variant - [Sequence Ontology: SO:0001819]
• NM_001290130.2:c.1200G>A - synonymous variant - [Sequence Ontology: SO:0001819]
• NM_017739.4:c.1629G>A - synonymous variant - [Sequence Ontology: SO:0001819]