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NM_002755.4(MAP2K1):c.171G>T (p.Lys57Asn) AND Melorheostosis

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 23, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002051691.9

Allele description [Variation Report for NM_002755.4(MAP2K1):c.171G>T (p.Lys57Asn)]

NM_002755.4(MAP2K1):c.171G>T (p.Lys57Asn)

Gene:
MAP2K1:mitogen-activated protein kinase kinase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q22.31
Genomic location:
Preferred name:
NM_002755.4(MAP2K1):c.171G>T (p.Lys57Asn)
HGVS:
  • NC_000015.10:g.66435117G>T
  • NG_008305.1:g.53245G>T
  • NM_002755.4:c.171G>TMANE SELECT
  • NP_002746.1:p.Lys57Asn
  • LRG_725t1:c.171G>T
  • LRG_725:g.53245G>T
  • LRG_725p1:p.Lys57Asn
  • NC_000015.9:g.66727455G>T
  • NM_002755.3:c.171G>T
Protein change:
K57N; LYS57ASN
Links:
OMIM: 176872.0007; dbSNP: rs869025608
NCBI 1000 Genomes Browser:
rs869025608
Molecular consequence:
  • NM_002755.4:c.171G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Melorheostosis (MEL)
Synonyms:
MELORHEOSTOSIS, ISOLATED
Identifiers:
MONDO: MONDO:0007970; MedGen: C3149631; Orphanet: 2485; OMIM: 155950; Human Phenotype Ontology: HP:6000817

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001364400OMIM
no assertion criteria provided
Pathogenic
(Jun 23, 2020)
somaticliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticnot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Somatic activating mutations in MAP2K1 cause melorheostosis.

Kang H, Jha S, Deng Z, Fratzl-Zelman N, Cabral WA, Ivovic A, Meylan F, Hanson EP, Lange E, Katz J, Roschger P, Klaushofer K, Cowen EW, Siegel RM, Marini JC, Bhattacharyya T.

Nat Commun. 2018 Apr 11;9(1):1390. doi: 10.1038/s41467-018-03720-z.

PubMed [citation]
PMID:
29643386
PMCID:
PMC5895796

Details of each submission

From OMIM, SCV001364400.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In samples of affected bone from 4 patients (Melo-2, Melo-6, Melo-16, and Melo-18) with melorheostosis (MEL; 155950), Kang et al. (2018) identified somatic mosaicism for a c.171G-T transversion (c.171G-T, NM_002755) in exon 2 of the MAP2K1 gene, resulting in a lys57-to-asn (K57N) substitution within the alpha-helix of the negative regulatory domain. Mutant allele frequency ranged from 3 to 34% in affected bone; the variant was not found in unaffected bone or in peripheral blood leukocytes, or in the ExAC database. Analysis of overlying skin in 3 of the patients showed the variant at an allele frequency of 4.1 to 16.2%; the variant was not detected in skin from patient Melo-16, who had a lower disease burden. Western blot analysis of cultured patient osteoblasts showed increased phosphorylation of MAP2K1 target kinases ERK1 (MAPK3; 601795) and ERK2 (MAPK1; 176948) compared to cells from unaffected bone, confirming a gain-of-function effect with the K57N variant, and the level of ERK1/2 activation by MEK1 generally correlated with mutant allele frequency. Consistent with enhanced activation, affected osteoblasts showed increased cell proliferation in vitro; however, there was also reduced mineralization and differentiation with affected osteoblasts, as well as increased osteoclast activity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticnot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024