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NM_000539.3(RHO):c.317G>C (p.Gly106Ala) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Aug 8, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002048281.6

Allele description [Variation Report for NM_000539.3(RHO):c.317G>C (p.Gly106Ala)]

NM_000539.3(RHO):c.317G>C (p.Gly106Ala)

Gene:
RHO:rhodopsin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q22.1
Genomic location:
Preferred name:
NM_000539.3(RHO):c.317G>C (p.Gly106Ala)
HGVS:
  • NC_000003.12:g.129529050G>C
  • NG_009115.1:g.5412G>C
  • NM_000539.3:c.317G>CMANE SELECT
  • NP_000530.1:p.Gly106Ala
  • NC_000003.11:g.129247893G>C
Protein change:
G106A
Links:
dbSNP: rs1578278417
NCBI 1000 Genomes Browser:
rs1578278417
Molecular consequence:
  • NM_000539.3:c.317G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002302236Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Aug 8, 2022)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A completed screen for mutations of the rhodopsin gene in a panel of patients with autosomal dominant retinitis pigmentosa.

Inglehearn CF, Keen TJ, Bashir R, Jay M, Fitzke F, Bird AC, Crombie A, Bhattacharya S.

Hum Mol Genet. 1992 Apr;1(1):41-5.

PubMed [citation]
PMID:
1301135

G106R rhodopsin mutation is also present in Spanish ADRP patients.

Ayuso C, Reig C, Garcia-Sandoval B, Trujillo MJ, AntiƱolo G, Borrego S, Carballo M.

Ophthalmic Genet. 1996 Sep;17(3):95-101.

PubMed [citation]
PMID:
8905849
See all PubMed Citations (5)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002302236.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Gly106 amino acid residue in RHO. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 1301135, 8905849, 11094174, 28559085). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt RHO protein function. ClinVar contains an entry for this variant (Variation ID: 1514513). This variant has not been reported in the literature in individuals affected with RHO-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with alanine, which is neutral and non-polar, at codon 106 of the RHO protein (p.Gly106Ala).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024