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NM_018474.6(KIZ):c.253G>C (p.Glu85Gln) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 5, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002041903.4

Allele description [Variation Report for NM_018474.6(KIZ):c.253G>C (p.Glu85Gln)]

NM_018474.6(KIZ):c.253G>C (p.Glu85Gln)

Genes:
LOC130065509:ATAC-STARR-seq lymphoblastoid active region 17619 [Gene]
KIZ:kizuna centrosomal protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20p11.23
Genomic location:
Preferred name:
NM_018474.6(KIZ):c.253G>C (p.Glu85Gln)
HGVS:
  • NC_000020.11:g.21136490G>C
  • NG_033122.2:g.15511G>C
  • NM_001163022.3:c.6+4331G>C
  • NM_001163023.3:c.6+4331G>C
  • NM_001276389.2:c.169-9075G>C
  • NM_001352434.2:c.253G>C
  • NM_001352435.2:c.6+4331G>C
  • NM_001352436.2:c.-134G>C
  • NM_018474.6:c.253G>CMANE SELECT
  • NP_001339363.1:p.Glu85Gln
  • NP_060944.3:p.Glu85Gln
  • NC_000020.10:g.21117131G>C
Protein change:
E85Q
Links:
dbSNP: rs2122373298
NCBI 1000 Genomes Browser:
rs2122373298
Molecular consequence:
  • NM_001352436.2:c.-134G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001163022.3:c.6+4331G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001163023.3:c.6+4331G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001276389.2:c.169-9075G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352435.2:c.6+4331G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001352434.2:c.253G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_018474.6:c.253G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002110957Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Feb 5, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002110957.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. This variant has not been reported in the literature in individuals affected with KIZ-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glutamic acid, which is acidic and polar, with glutamine, which is neutral and polar, at codon 85 of the KIZ protein (p.Glu85Gln).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024