NM_024426.6(WT1):c.33_34delinsAC (p.Thr12Pro) AND multiple conditions

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 13, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002023068.4

Allele description [Variation Report for NM_024426.6(WT1):c.33_34delinsAC (p.Thr12Pro)]

NM_024426.6(WT1):c.33_34delinsAC (p.Thr12Pro)

Genes:

WT1:WT1 transcription factor [Gene - OMIM - HGNC]
LOC107982234:WT1/WT1-AS bi-directional promoter region [Gene]

Variant type:

Indel

Cytogenetic location:

11p13

Genomic location:

Preferred name:

NM_024426.6(WT1):c.33_34delinsAC (p.Thr12Pro)

HGVS:

NC_000011.10:g.32435327_32435328delinsGT
NG_009272.1:g.5214_5215delinsAC
NG_050766.1:g.4580_4581delinsGT
NM_000378.6:c.33_34delinsAC
NM_024424.5:c.33_34delinsAC
NM_024426.6:c.33_34delinsACMANE SELECT
NP_000369.4:p.Thr12Pro
NP_077742.3:p.Thr12Pro
NP_077744.4:p.Thr12Pro
LRG_525:g.5214_5215delinsAC
NC_000011.9:g.32456873_32456874delinsGT
NR_160306.1:n.212_213delinsAC

Protein change:

T12P

Links:

dbSNP: rs2133107830

NCBI 1000 Genomes Browser:

rs2133107830

Molecular consequence:

NM_000378.6:c.33_34delinsAC - missense variant - [Sequence Ontology: SO:0001583]
NM_024424.5:c.33_34delinsAC - missense variant - [Sequence Ontology: SO:0001583]
NM_024426.6:c.33_34delinsAC - missense variant - [Sequence Ontology: SO:0001583]
NR_160306.1:n.212_213delinsAC - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:: Drash syndrome (DDS)
Synonyms:: WILMS TUMOR AND PSEUDO- OR TRUE HERMAPHRODITISM; Wilms tumor and pseudohermaphroditism; Nephropathy, wilms tumor, and genital anomalies; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0008682; MedGen: C0950121; Orphanet: 220; OMIM: 194080

Name:: Frasier syndrome
Identifiers:: MONDO: MONDO:0007635; MeSH: D052159; MedGen: C0950122; Orphanet: 347; OMIM: 136680

Name:: Wilms tumor 1 (WT1)
Synonyms:: Wilms tumor, somatic
Identifiers:: MONDO: MONDO:0008679; MedGen: CN033288; Orphanet: 654; OMIM: 194070

Name:: 11p partial monosomy syndrome (WAGR)
Synonyms:: CHROMOSOME 11p13 DELETION SYNDROME; WAGR syndrome; WAGR Complex; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0008681; MedGen: C0206115; Orphanet: 893; OMIM: 194072

Recent activity

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Homo sapiens serine/threonine kinase 32B (STK32B), transcript variant 1, mRNA
Homo sapiens serine/threonine kinase 32B (STK32B), transcript variant 1, mRNA
gi|1519313073|ref|NM_018401.3|

Nucleotide
Taxonomy Links for Gene (Select 100422021) (1)
Taxonomy
PMC Links for OMIM (Select 612588) (3)
PMC
Mus musculus cell division cycle 42 (Cdc42), transcript variant 14, non-coding R...
Mus musculus cell division cycle 42 (Cdc42), transcript variant 14, non-coding RNA
gi|2496845453|ref|NR_185139.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002305836	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Aug 13, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002305836

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Aug 13, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002305836.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This variant has not been reported in the literature in individuals affected with WT1-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate insufficient coverage at this position in the ExAC database. This variant, c.18_19delinsAC, is a complex sequence change that results in the deletion of 1 and insertion of 1 amino acid(s) in the WT1 protein (p.Thr7Pro).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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