NM_000255.4(MMUT):c.322C>G (p.Arg108Gly) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 31, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002013072.5

Allele description

NM_000255.4(MMUT):c.322C>G (p.Arg108Gly)

Gene:
MMUT:methylmalonyl-CoA mutase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p12.3
Genomic location:
Preferred name:
NM_000255.4(MMUT):c.322C>G (p.Arg108Gly)
HGVS:
  • NC_000006.12:g.49459145G>C
  • NG_007100.1:g.8995C>G
  • NM_000255.4:c.322C>GMANE SELECT
  • NP_000246.2:p.Arg108Gly
  • NC_000006.11:g.49426858G>C
Protein change:
R108G
Links:
dbSNP: rs121918257
NCBI 1000 Genomes Browser:
rs121918257
Molecular consequence:
  • NM_000255.4:c.322C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002291060Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Dec 31, 2020)
germlineclinical testing

PubMed (6)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Prevention of metabolic decompensation in an infant with mutase deficient methylmalonic aciduria undergoing cardiopulmonary bypass.

Wang RY, Chang RC, Sowa ME, Chang AC, Abdenur JE.

World J Pediatr. 2014 Feb;10(1):83-5. doi: 10.1007/s12519-014-0458-0. Epub 2014 Jan 25.

PubMed [citation]
PMID:
24464670

A Population-Based Genomic Study of Inherited Metabolic Diseases Detected Through Newborn Screening.

Park KJ, Park S, Lee E, Park JH, Park JH, Park HD, Lee SY, Kim JW.

Ann Lab Med. 2016 Nov;36(6):561-72. doi: 10.3343/alm.2016.36.6.561.

PubMed [citation]
PMID:
27578510
PMCID:
PMC5011110
See all PubMed Citations (6)

Details of each submission

From Invitae, SCV002291060.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (6)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Arg108 amino acid residue in MUT. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 16281286, 24464670, 27578510, 11528502). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). This variant has been observed in individual(s) with methylmalonic aciduria (PMID: 16281286, 23430940). This variant is not present in population databases (ExAC no frequency). This sequence change replaces arginine with glycine at codon 108 of the MUT protein (p.Arg108Gly). The arginine residue is highly conserved and there is a moderate physicochemical difference between arginine and glycine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024