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NM_001457.4(FLNB):c.4834G>A (p.Gly1612Ser) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 11, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001986135.4

Allele description [Variation Report for NM_001457.4(FLNB):c.4834G>A (p.Gly1612Ser)]

NM_001457.4(FLNB):c.4834G>A (p.Gly1612Ser)

Gene:
FLNB:filamin B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p14.3
Genomic location:
Preferred name:
NM_001457.4(FLNB):c.4834G>A (p.Gly1612Ser)
HGVS:
  • NC_000003.12:g.58136141G>A
  • NG_012801.1:g.132742G>A
  • NM_001164317.2:c.4927G>A
  • NM_001164318.2:c.4834G>A
  • NM_001164319.2:c.4834G>A
  • NM_001457.4:c.4834G>AMANE SELECT
  • NP_001157789.1:p.Gly1643Ser
  • NP_001157790.1:p.Gly1612Ser
  • NP_001157791.1:p.Gly1612Ser
  • NP_001448.2:p.Gly1612Ser
  • NC_000003.11:g.58121868G>A
Protein change:
G1612S
Links:
dbSNP: rs2107225016
NCBI 1000 Genomes Browser:
rs2107225016
Molecular consequence:
  • NM_001164317.2:c.4927G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001164318.2:c.4834G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001164319.2:c.4834G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001457.4:c.4834G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002279176Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(May 11, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutations in two regions of FLNB result in atelosteogenesis I and III.

Farrington-Rock C, Firestein MH, Bicknell LS, Superti-Furga A, Bacino CA, Cormier-Daire V, Le Merrer M, Baumann C, Roume J, Rump P, Verheij JB, Sweeney E, Rimoin DL, Lachman RS, Robertson SP, Cohn DH, Krakow D.

Hum Mutat. 2006 Jul;27(7):705-10.

PubMed [citation]
PMID:
16752402

Phenotype and genotype in patients with Larsen syndrome: clinical homogeneity and allelic heterogeneity in seven patients.

Girisha KM, Bidchol AM, Graul-Neumann L, Gupta A, Hehr U, Lessel D, Nader S, Shah H, Wickert J, Kutsche K.

BMC Med Genet. 2016 Apr 6;17:27. doi: 10.1186/s12881-016-0290-6.

PubMed [citation]
PMID:
27048506
PMCID:
PMC4822278
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002279176.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This variant is also known as c.4927G>A (p.Gly1643Ser). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Gly1612 amino acid residue in FLNB. Other variant(s) that disrupt this residue have been observed in individuals with FLNB-related conditions (PMID: 16752402), which suggests that this may be a clinically significant amino acid residue. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt FLNB protein function. ClinVar contains an entry for this variant (Variation ID: 1490901). This missense change has been observed in individual(s) with clinical features of Larsen syndrome (PMID: 27048506; Invitae). In at least one individual the variant was observed to be de novo. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 1612 of the FLNB protein (p.Gly1612Ser).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024