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NM_016203.4(PRKAG2):c.1114G>C (p.Asp372His) AND Lethal congenital glycogen storage disease of heart

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 23, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001977421.6

Allele description [Variation Report for NM_016203.4(PRKAG2):c.1114G>C (p.Asp372His)]

NM_016203.4(PRKAG2):c.1114G>C (p.Asp372His)

Gene:
PRKAG2:protein kinase AMP-activated non-catalytic subunit gamma 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q36.1
Genomic location:
Preferred name:
NM_016203.4(PRKAG2):c.1114G>C (p.Asp372His)
HGVS:
  • NC_000007.14:g.151568835C>G
  • NG_007486.2:g.313397G>C
  • NM_001040633.2:c.982G>C
  • NM_001304527.2:c.739G>C
  • NM_001304531.2:c.391G>C
  • NM_001363698.2:c.742G>C
  • NM_016203.4:c.1114G>CMANE SELECT
  • NM_024429.2:c.391G>C
  • NP_001035723.1:p.Asp328His
  • NP_001291456.1:p.Asp247His
  • NP_001291460.1:p.Asp131His
  • NP_001350627.1:p.Asp248His
  • NP_057287.2:p.Asp372His
  • NP_077747.1:p.Asp131His
  • LRG_430t1:c.1114G>C
  • LRG_430:g.313397G>C
  • LRG_430p1:p.Asp372His
  • NC_000007.13:g.151265921C>G
  • NG_007486.1:g.313396G>C
Protein change:
D131H
Links:
dbSNP: rs760826751
NCBI 1000 Genomes Browser:
rs760826751
Molecular consequence:
  • NM_001040633.2:c.982G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304527.2:c.739G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001304531.2:c.391G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001363698.2:c.742G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016203.4:c.1114G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024429.2:c.391G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Lethal congenital glycogen storage disease of heart
Synonyms:
GLYCOGEN STORAGE DISEASE OF HEART; PHOSPHORYLASE KINASE DEFICIENCY OF HEART
Identifiers:
MONDO: MONDO:0009867; MedGen: C1849813; Orphanet: 439854; OMIM: 261740

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002266875Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Mar 23, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002266875.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant has not been reported in the literature in individuals with PRKAG2-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt PRKAG2 protein function. This variant is present in population databases (rs760826751, ExAC 0.001%). This sequence change replaces aspartic acid with histidine at codon 372 of the PRKAG2 protein (p.Asp372His). The aspartic acid residue is highly conserved and there is a moderate physicochemical difference between aspartic acid and histidine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024