NM_001267550.2(TTN):c.104381C>T (p.Ser34794Leu) AND multiple conditions

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 14, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001958205.4

Allele description [Variation Report for NM_001267550.2(TTN):c.104381C>T (p.Ser34794Leu)]

NM_001267550.2(TTN):c.104381C>T (p.Ser34794Leu)

Genes:

TTN-AS1:TTN antisense RNA 1 [Gene - HGNC]
TTN:titin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q31.2

Genomic location:

Preferred name:

NM_001267550.2(TTN):c.104381C>T (p.Ser34794Leu)

HGVS:

NC_000002.12:g.178532234G>A
NG_011618.3:g.303569C>T
NG_051363.1:g.14408G>A
NM_001256850.1:c.99458C>T
NM_001267550.2:c.104381C>TMANE SELECT
NM_003319.4:c.77186C>T
NM_133378.4:c.96677C>T
NM_133432.3:c.77561C>T
NM_133437.4:c.77762C>T
NP_001243779.1:p.Ser33153Leu
NP_001254479.2:p.Ser34794Leu
NP_003310.4:p.Ser25729Leu
NP_596869.4:p.Ser32226Leu
NP_597676.3:p.Ser25854Leu
NP_597681.4:p.Ser25921Leu
LRG_391:g.303569C>T
NC_000002.11:g.179396961G>A

Protein change:

S25729L

Links:

dbSNP: rs1302011604

NCBI 1000 Genomes Browser:

rs1302011604

Molecular consequence:

NM_001256850.1:c.99458C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001267550.2:c.104381C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_003319.4:c.77186C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_133378.4:c.96677C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_133432.3:c.77561C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_133437.4:c.77762C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Dilated cardiomyopathy 1G (CMD1G)
Identifiers:: MONDO: MONDO:0011400; MedGen: C1858763; Orphanet: 154; OMIM: 604145

Name:: Autosomal recessive limb-girdle muscular dystrophy type 2J (LGMDR10)
Synonyms:: Limb-girdle muscular dystrophy, type 2J; MUSCULAR DYSTROPHY, LIMB-GIRDLE, AUTOSOMAL RECESSIVE 10
Identifiers:: MONDO: MONDO:0012127; MedGen: C1837342; Orphanet: 140922; OMIM: 608807

Recent activity

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GTP cyclohydrolase I [Listeria monocytogenes EGD-e]
GTP cyclohydrolase I [Listeria monocytogenes EGD-e]
gi|16803972|ref|NP_465457.1|

Protein
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Listeria monocytogenes EGD...
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Listeria monocytogenes EGD-e]
gi|16803975|ref|NP_465460.1|

Protein
toxic ion resistance protein [Listeria monocytogenes EGD-e]
toxic ion resistance protein [Listeria monocytogenes EGD-e]
gi|16804006|ref|NP_465491.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002226990	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Nov 14, 2023)	germline	clinical testing	PubMed (3) [See all records that cite these PMIDs] 25589632, 23975875, 28492532

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002226990

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Nov 14, 2023)

germline

clinical testing

PubMed (3)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease.

Roberts AM, Ware JS, Herman DS, Schafer S, Baksi J, Bick AG, Buchan RJ, Walsh R, John S, Wilkinson S, Mazzarotto F, Felkin LE, Gong S, MacArthur JA, Cunningham F, Flannick J, Gabriel SB, Altshuler DM, Macdonald PS, Heinig M, Keogh AM, Hayward CS, et al.

Sci Transl Med. 2015 Jan 14;7(270):270ra6. doi: 10.1126/scitranslmed.3010134.

PubMed [citation]

PMID:: 25589632
PMCID:: PMC4560092

Recessive truncating titin gene, TTN, mutations presenting as centronuclear myopathy.

Ceyhan-Birsoy O, Agrawal PB, Hidalgo C, Schmitz-Abe K, DeChene ET, Swanson LC, Soemedi R, Vasli N, Iannaccone ST, Shieh PB, Shur N, Dennison JM, Lawlor MW, Laporte J, Markianos K, Fairbrother WG, Granzier H, Beggs AH.

Neurology. 2013 Oct 1;81(14):1205-14. doi: 10.1212/WNL.0b013e3182a6ca62. Epub 2013 Aug 23.

PubMed [citation]

PMID:: 23975875
PMCID:: PMC3795603

See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002226990.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (3)

Description

This sequence change replaces serine, which is neutral and polar, with leucine, which is neutral and non-polar, at codon 34794 of the TTN protein (p.Ser34794Leu). This variant is present in population databases (no rsID available, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with TTN-related conditions. ClinVar contains an entry for this variant (Variation ID: 1445143). Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. This variant is located in the M band of TTN (PMID: 25589632). Variants in this region may be relevant for neuromuscular disorders, but have not been definitively shown to cause cardiomyopathy (PMID: 23975875). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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