NM_000382.3(ALDH3A2):c.824A>T (p.Glu275Val) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 20, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001934614.5

Allele description [Variation Report for NM_000382.3(ALDH3A2):c.824A>T (p.Glu275Val)]

NM_000382.3(ALDH3A2):c.824A>T (p.Glu275Val)

Gene:

ALDH3A2:aldehyde dehydrogenase 3 family member A2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17p11.2

Genomic location:

Preferred name:

NM_000382.3(ALDH3A2):c.824A>T (p.Glu275Val)

HGVS:

NC_000017.11:g.19661152A>T
NG_007095.2:g.17402A>T
NM_000382.3:c.824A>TMANE SELECT
NM_001031806.2:c.824A>T
NM_001369136.1:c.824A>T
NM_001369137.2:c.824A>T
NM_001369138.2:c.824A>T
NM_001369139.1:c.824A>T
NM_001369146.2:c.824A>T
NM_001369148.2:c.245A>T
NP_000373.1:p.Glu275Val
NP_001026976.1:p.Glu275Val
NP_001356065.1:p.Glu275Val
NP_001356066.1:p.Glu275Val
NP_001356067.1:p.Glu275Val
NP_001356068.1:p.Glu275Val
NP_001356075.1:p.Glu275Val
NP_001356077.1:p.Glu82Val
NC_000017.10:g.19564465A>T

Protein change:

E275V

Links:

dbSNP: rs1379222692

NCBI 1000 Genomes Browser:

rs1379222692

Molecular consequence:

NM_000382.3:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001031806.2:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369136.1:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369137.2:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369138.2:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369139.1:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369146.2:c.824A>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001369148.2:c.245A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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PREDICTED: Rattus norvegicus uncharacterized LOC102555876 (LOC102555876), ncRNA
PREDICTED: Rattus norvegicus uncharacterized LOC102555876 (LOC102555876), ncRNA
gi|2678977974|ref|XR_362505.5|

Nucleotide
Hungary (2)
MeSH
Mus musculus ribonuclease, RNase A family 4, mRNA (cDNA clone MGC:76641 IMAGE:30...
Mus musculus ribonuclease, RNase A family 4, mRNA (cDNA clone MGC:76641 IMAGE:30059308), complete cds
gi|44890557|gb|BC066843.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002128275	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Jun 20, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002128275

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Jun 20, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002128275.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This sequence change replaces glutamic acid, which is acidic and polar, with valine, which is neutral and non-polar, at codon 275 of the ALDH3A2 protein (p.Glu275Val). This variant is present in population databases (no rsID available, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with ALDH3A2-related conditions. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt ALDH3A2 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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