U.S. flag

An official website of the United States government

NM_000053.4(ATP7B):c.3560_3561del (p.Val1187fs) AND Wilson disease

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 6, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001914818.4

Allele description [Variation Report for NM_000053.4(ATP7B):c.3560_3561del (p.Val1187fs)]

NM_000053.4(ATP7B):c.3560_3561del (p.Val1187fs)

Gene:
ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
13q14.3
Genomic location:
Preferred name:
NM_000053.4(ATP7B):c.3560_3561del (p.Val1187fs)
HGVS:
  • NC_000013.11:g.51939190AC[1]
  • NG_008806.1:g.77303TG[1]
  • NM_000053.4:c.3560_3561delMANE SELECT
  • NM_001005918.3:c.2939_2940del
  • NM_001243182.2:c.3227_3228del
  • NM_001330578.2:c.3326_3327del
  • NM_001330579.2:c.3308_3309del
  • NP_000044.2:p.Val1187fs
  • NP_001005918.1:p.Val980fs
  • NP_001230111.1:p.Val1076fs
  • NP_001317507.1:p.Val1109fs
  • NP_001317508.1:p.Val1103fs
  • NC_000013.10:g.52513325_52513326del
  • NC_000013.10:g.52513326AC[1]
Protein change:
V1076fs
Links:
dbSNP: rs2138673853
NCBI 1000 Genomes Browser:
rs2138673853
Molecular consequence:
  • NM_000053.4:c.3560_3561del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001005918.3:c.2939_2940del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001243182.2:c.3227_3228del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001330578.2:c.3326_3327del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001330579.2:c.3308_3309del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Wilson disease (WND)
Synonyms:
Wilson's disease; Hepatolenticular degeneration
Identifiers:
MONDO: MONDO:0010200; MedGen: C0019202; Orphanet: 905; OMIM: 277900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002138767Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Pathogenic
(Sep 6, 2021) 		germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Null mutation of the murine ATP7B (Wilson disease) gene results in intracellular copper accumulation and late-onset hepatic nodular transformation.

Buiakova OI, Xu J, Lutsenko S, Zeitlin S, Das K, Das S, Ross BM, Mekios C, Scheinberg IH, Gilliam TC.

Hum Mol Genet. 1999 Sep;8(9):1665-71.

PubMed [citation]
PMID:
10441329

Frameshift and nonsense mutations in the gene for ATPase7B are associated with severe impairment of copper metabolism and with an early clinical manifestation of Wilson's disease.

Gromadzka G, Schmidt HH, Genschel J, Bochow B, Rodo M, Tarnacka B, Litwin T, Chabik G, Członkowska A.

Clin Genet. 2005 Dec;68(6):524-32.

PubMed [citation]
PMID:
16283883
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002138767.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

For these reasons, this variant has been classified as Pathogenic. This variant has not been reported in the literature in individuals affected with ATP7B-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change creates a premature translational stop signal (p.Val1187Alafs*71) in the ATP7B gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in ATP7B are known to be pathogenic (PMID: 10441329, 16283883).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024