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NM_000166.6(GJB1):c.220G>C (p.Val74Leu) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001895649.3

Allele description

NM_000166.6(GJB1):c.220G>C (p.Val74Leu)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.220G>C (p.Val74Leu)
HGVS:
  • NC_000023.11:g.71223927G>C
  • NG_008357.1:g.13716G>C
  • NM_000166.6:c.220G>CMANE SELECT
  • NM_001097642.3:c.220G>C
  • NP_000157.1:p.Val74Leu
  • NP_001091111.1:p.Val74Leu
  • LRG_245t2:c.220G>C
  • LRG_245:g.13716G>C
  • LRG_245p2:p.Val74Leu
  • NC_000023.10:g.70443777G>C
Protein change:
V74L
Links:
dbSNP: rs772377652
NCBI 1000 Genomes Browser:
rs772377652
Molecular consequence:
  • NM_000166.6:c.220G>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.220G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002154590Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Sep 30, 2021)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

X-linked Charcot-Marie-Tooth disease predominates in a cohort of multiethnic Malaysian patients.

Shahrizaila N, Samulong S, Tey S, Suan LC, Meng LK, Goh KJ, Ahmad-Annuar A.

Muscle Nerve. 2014 Feb;49(2):198-201. doi: 10.1002/mus.23892. Epub 2013 Oct 4.

PubMed [citation]
PMID:
23649551

Phenotypes and cellular effects of GJB1 mutations causing CMT1X in a cohort of 226 Chinese CMT families.

Liu L, Li XB, Hu ZHM, Zi XH, Zhao X, Xie YZ, Huang SHX, Xia K, Tang BS, Zhang RX.

Clin Genet. 2017 Jun;91(6):881-891. doi: 10.1111/cge.12913. Epub 2017 Mar 8.

PubMed [citation]
PMID:
27804109
See all PubMed Citations (3)

Details of each submission

From Invitae, SCV002154590.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant disrupts the p.Val74 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been observed in individuals with GJB1-related conditions (PMID: 23649551, 27804109; Invitae), which suggests that this may be a clinically significant amino acid residue. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. This variant has not been reported in the literature in individuals affected with GJB1-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the ExAC database. This sequence change replaces valine with leucine at codon 74 of the GJB1 protein (p.Val74Leu). The valine residue is moderately conserved and there is a small physicochemical difference between valine and leucine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 20, 2024