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NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 11, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001868223.8

Allele description [Variation Report for NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)]

NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)

Gene:
CYP11B1:cytochrome P450 family 11 subfamily B member 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q24.3
Genomic location:
Preferred name:
NM_000497.4(CYP11B1):c.346T>G (p.Trp116Gly)
HGVS:
  • NC_000008.11:g.142879081A>C
  • NG_007954.1:g.5740T>G
  • NG_046132.1:g.4948A>C
  • NM_000497.4:c.346T>GMANE SELECT
  • NM_001026213.1:c.346T>G
  • NP_000488.3:p.Trp116Gly
  • NP_000488.3:p.Trp116Gly
  • NP_001021384.1:p.Trp116Gly
  • NC_000008.10:g.143960497A>C
  • NM_000497.3:c.346T>G
Protein change:
W116G
Links:
dbSNP: rs772733691
NCBI 1000 Genomes Browser:
rs772733691
Molecular consequence:
  • NM_000497.4:c.346T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001026213.1:c.346T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002266320Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Jun 11, 2021)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Functional consequences of seven novel mutations in the CYP11B1 gene: four mutations associated with nonclassic and three mutations causing classic 11{beta}-hydroxylase deficiency.

Parajes S, Loidi L, Reisch N, Dhir V, Rose IT, Hampel R, Quinkler M, Conway GS, Castro-Feijóo L, Araujo-Vilar D, Pombo M, Dominguez F, Williams EL, Cole TR, Kirk JM, Kaminsky E, Rumsby G, Arlt W, Krone N.

J Clin Endocrinol Metab. 2010 Feb;95(2):779-88. doi: 10.1210/jc.2009-0651. Epub 2010 Jan 20.

PubMed [citation]
PMID:
20089618
PMCID:
PMC2846960

Congenital adrenal hyperplasia due to 11-hydroxylase deficiency: functional characterization of two novel point mutations and a three-base pair deletion in the CYP11B1 gene.

Krone N, Riepe FG, Götze D, Korsch E, Rister M, Commentz J, Partsch CJ, Grötzinger J, Peter M, Sippell WG.

J Clin Endocrinol Metab. 2005 Jun;90(6):3724-30. Epub 2005 Mar 8.

PubMed [citation]
PMID:
15755848
See all PubMed Citations (5)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002266320.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

Experimental studies have shown that this variant affects CYP11B1 protein function (PMID: 20089618). This variant has been observed in individual(s) with adrenal hyperplasia (PMID: 20089618). ClinVar contains an entry for this variant (Variation ID: 553208). This variant is present in population databases (rs772733691, ExAC 0.001%). This sequence change replaces tryptophan with glycine at codon 116 of the CYP11B1 protein (p.Trp116Gly). The tryptophan residue is highly conserved and there is a large physicochemical difference between tryptophan and glycine. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt CYP11B1 protein function. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Trp116 amino acid residue in CYP11B1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 15755848, 18204274, 28228528). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024