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NM_001083961.2(WDR62):c.3050C>G (p.Pro1017Arg) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 28, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001864334.4

Allele description [Variation Report for NM_001083961.2(WDR62):c.3050C>G (p.Pro1017Arg)]

NM_001083961.2(WDR62):c.3050C>G (p.Pro1017Arg)

Gene:
WDR62:WD repeat domain 62 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.12
Genomic location:
Preferred name:
NM_001083961.2(WDR62):c.3050C>G (p.Pro1017Arg)
HGVS:
  • NC_000019.10:g.36101742C>G
  • NG_028101.1:g.51862C>G
  • NM_001083961.2:c.3050C>GMANE SELECT
  • NM_173636.5:c.3050C>G
  • NP_001077430.1:p.Pro1017Arg
  • NP_775907.4:p.Pro1017Arg
  • NC_000019.9:g.36592644C>G
Protein change:
P1017R
Links:
dbSNP: rs1458480400
NCBI 1000 Genomes Browser:
rs1458480400
Molecular consequence:
  • NM_001083961.2:c.3050C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_173636.5:c.3050C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002132814Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Uncertain significance
(Jul 28, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV002132814.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals affected with WDR62-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces proline with arginine at codon 1017 of the WDR62 protein (p.Pro1017Arg). The proline residue is moderately conserved and there is a moderate physicochemical difference between proline and arginine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024