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NM_000503.6(EYA1):c.1748T>C (p.Leu583Pro) AND Focal segmental glomerulosclerosis

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
May 3, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001849294.1

Allele description [Variation Report for NM_000503.6(EYA1):c.1748T>C (p.Leu583Pro)]

NM_000503.6(EYA1):c.1748T>C (p.Leu583Pro)

Gene:
EYA1:EYA transcriptional coactivator and phosphatase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q13.3
Genomic location:
Preferred name:
NM_000503.6(EYA1):c.1748T>C (p.Leu583Pro)
HGVS:
  • NC_000008.11:g.71199371A>G
  • NG_011735.3:g.353760T>C
  • NM_000503.6:c.1748T>CMANE SELECT
  • NM_001288574.2:c.1730T>C
  • NM_001288575.2:c.1382T>C
  • NM_001370333.1:c.1835T>C
  • NM_001370334.1:c.1748T>C
  • NM_001370335.1:c.1748T>C
  • NM_001370336.1:c.1727T>C
  • NM_172058.4:c.1748T>C
  • NM_172059.5:c.1730T>C
  • NP_000494.2:p.Leu583Pro
  • NP_001275503.1:p.Leu577Pro
  • NP_001275504.1:p.Leu461Pro
  • NP_001357262.1:p.Leu612Pro
  • NP_001357263.1:p.Leu583Pro
  • NP_001357264.1:p.Leu583Pro
  • NP_001357265.1:p.Leu576Pro
  • NP_742055.1:p.Leu583Pro
  • NP_742056.2:p.Leu577Pro
  • NC_000008.10:g.72111606A>G
  • NG_011735.2:g.167862T>C
  • NM_000503.4:c.1748T>C
  • NM_000503.5:c.1748T>C
  • NM_172058.2:c.1748T>C
  • Q99502:p.Leu583Pro
  • c.1748T>C
Protein change:
L461P
Links:
UniProtKB: Q99502#VAR_016869; dbSNP: rs397517920
NCBI 1000 Genomes Browser:
rs397517920
Molecular consequence:
  • NM_000503.6:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001288574.2:c.1730T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001288575.2:c.1382T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370333.1:c.1835T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370334.1:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370335.1:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001370336.1:c.1727T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172058.4:c.1748T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172059.5:c.1730T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Focal segmental glomerulosclerosis (FSGS)
Synonyms:
Glomerulosclerosis, focal; Focal sclerosis with hyalinosis
Identifiers:
MONDO: MONDO:0100313; MedGen: C0017668; Human Phenotype Ontology: HP:0000097

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002106630Yale Center for Mendelian Genomics, Yale University - Yale Center for Mendelian Genomics
no assertion criteria provided
Likely pathogenic
(May 3, 2020)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedliterature only

Citations

PubMed

Inherited glomerular diseases in the gilded age of genomic advancements.

Gulati A, Dahl N, Tufro A.

Pediatr Nephrol. 2020 Jun;35(6):959-968. doi: 10.1007/s00467-019-04266-y. Epub 2019 May 3. Review.

PubMed [citation]
PMID:
31049720
PMCID:
PMC7184048

Details of each submission

From Yale Center for Mendelian Genomics, Yale University - Yale Center for Mendelian Genomics, SCV002106630.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023