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NM_018082.6(POLR3B):c.1568T>A (p.Val523Glu) AND Hypogonadotropic hypogonadism

Germline classification:
association (1 submission)
Last evaluated:
Aug 10, 2016
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001849282.9

Allele description [Variation Report for NM_018082.6(POLR3B):c.1568T>A (p.Val523Glu)]

NM_018082.6(POLR3B):c.1568T>A (p.Val523Glu)

Gene:
POLR3B:RNA polymerase III subunit B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q23.3
Genomic location:
Preferred name:
NM_018082.6(POLR3B):c.1568T>A (p.Val523Glu)
Other names:
rs138249161; NM_018082.5(POLR3B):c.1568T>A; p.V523E
HGVS:
  • NC_000012.12:g.106432421T>A
  • NG_031837.1:g.79764T>A
  • NM_001160708.2:c.1394T>A
  • NM_018082.6:c.1568T>AMANE SELECT
  • NP_001154180.1:p.Val465Glu
  • NP_001154180.1:p.Val465Glu
  • NP_060552.4:p.Val523Glu
  • NC_000012.11:g.106826199T>A
  • NM_001160708.1:c.1394T>A
  • NM_018082.5:c.1568T>A
  • Q9NW08:p.Val523Glu
Protein change:
V465E; VAL523GLU
Links:
UniProtKB: Q9NW08#VAR_067006; OMIM: 614366.0005; dbSNP: rs138249161
NCBI 1000 Genomes Browser:
rs138249161
Molecular consequence:
  • NM_001160708.2:c.1394T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_018082.6:c.1568T>A - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
probably has functional consequence

Condition(s)

Name:
Hypogonadotropic hypogonadism
Synonyms:
Hypogonadotrophic hypogonadism; Isolated hypogonadotropic hypogonadism; Low gonadotropins (secondary hypogonadism); See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0018555; MedGen: C0271623; OMIM: PS147950; Human Phenotype Ontology: HP:0000044

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002106491Yale Center for Mendelian Genomics, Yale University - Yale Center for Mendelian Genomics
no assertion criteria provided
association
(Aug 10, 2016)
de novoliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyes1not providednot providednot providednot providedliterature only

Citations

PubMed

Phenotypic spectrum of POLR3B mutations: isolated hypogonadotropic hypogonadism without neurological or dental anomalies.

Richards MR, Plummer L, Chan YM, Lippincott MF, Quinton R, Kumanov P, Seminara SB.

J Med Genet. 2017 Jan;54(1):19-25. doi: 10.1136/jmedgenet-2016-104064. Epub 2016 Aug 10.

PubMed [citation]
PMID:
27512013
PMCID:
PMC5189673

Details of each submission

From Yale Center for Mendelian Genomics, Yale University - Yale Center for Mendelian Genomics, SCV002106491.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedliterature only PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Nov 10, 2024