NM_025137.4(SPG11):c.5986dup (p.Cys1996fs) AND Hereditary spastic paraplegia

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Nov 2, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001847635.3

Allele description [Variation Report for NM_025137.4(SPG11):c.5986dup (p.Cys1996fs)]

NM_025137.4(SPG11):c.5986dup (p.Cys1996fs)

Gene:

SPG11:SPG11 vesicle trafficking associated, spatacsin [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

15q21.1

Genomic location:

Preferred name:

NM_025137.4(SPG11):c.5986dup (p.Cys1996fs)

HGVS:

NC_000015.10:g.44574922dup
NG_008885.1:g.93757dup
NM_001160227.2:c.5867-2102dup
NM_025137.4:c.5986dupMANE SELECT
NP_079413.3:p.Cys1996fs
NC_000015.9:g.44867119_44867120insA
NC_000015.9:g.44867120dup
NM_025137.3:c.5986_5987insT
NM_025137.3:c.5986dup
NM_025137.3:c.5986dupT

Protein change:

C1996fs

Links:

dbSNP: rs312262775

NCBI 1000 Genomes Browser:

rs312262775

Molecular consequence:

NM_025137.4:c.5986dup - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001160227.2:c.5867-2102dup - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Hereditary spastic paraplegia
Synonyms:: Familial spastic paraparesis
Identifiers:: MONDO: MONDO:0019064; MedGen: C0037773; OMIM: PS303350

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002105741	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Nov 2, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002105741

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Nov 2, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002105741.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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