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NM_000527.5(LDLR):c.1013G>A (p.Cys338Tyr) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 13, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001843948.4

Allele description [Variation Report for NM_000527.5(LDLR):c.1013G>A (p.Cys338Tyr)]

NM_000527.5(LDLR):c.1013G>A (p.Cys338Tyr)

Gene:
LDLR:low density lipoprotein receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_000527.5(LDLR):c.1013G>A (p.Cys338Tyr)
HGVS:
  • NC_000019.10:g.11110724G>A
  • NG_009060.1:g.26344G>A
  • NM_000527.5:c.1013G>AMANE SELECT
  • NM_001195798.2:c.1013G>A
  • NM_001195799.2:c.890G>A
  • NM_001195800.2:c.509G>A
  • NM_001195803.2:c.632G>A
  • NP_000518.1:p.Cys338Tyr
  • NP_000518.1:p.Cys338Tyr
  • NP_001182727.1:p.Cys338Tyr
  • NP_001182728.1:p.Cys297Tyr
  • NP_001182729.1:p.Cys170Tyr
  • NP_001182732.1:p.Cys211Tyr
  • LRG_274t1:c.1013G>A
  • LRG_274:g.26344G>A
  • LRG_274p1:p.Cys338Tyr
  • NC_000019.9:g.11221400G>A
  • NM_000527.4:c.1013G>A
  • c.1013G>A
Protein change:
C170Y
Links:
LDLR-LOVD, British Heart Foundation: LDLR_000620;
Molecular consequence:
  • NM_000527.5:c.1013G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195798.2:c.1013G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195799.2:c.890G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195800.2:c.509G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195803.2:c.632G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002103276Mayo Clinic Laboratories, Mayo Clinic
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(May 13, 2021)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

FH-Freiburg: a novel missense mutation (C317Y) in growth factor repeat A of the low density lipoprotein receptor gene in a German patient with homozygous familial hypercholesterolemia.

Nauck MS, Scharnagl H, Nissen H, Schürmann C, Matern D, Nauck MA, Wieland H, März W.

Atherosclerosis. 2000 Aug;151(2):525-34. Erratum in: Atherosclerosis. 2003 Mar;167(1):173.. Mattern D [corrected to Matern D].

PubMed [citation]
PMID:
10924730

The molecular basis of familial hypercholesterolemia in the Czech Republic: spectrum of LDLR mutations and genotype-phenotype correlations.

Tichý L, Freiberger T, Zapletalová P, Soška V, Ravčuková B, Fajkusová L.

Atherosclerosis. 2012 Aug;223(2):401-8. doi: 10.1016/j.atherosclerosis.2012.05.014. Epub 2012 May 23.

PubMed [citation]
PMID:
22698793
See all PubMed Citations (4)

Details of each submission

From Mayo Clinic Laboratories, Mayo Clinic, SCV002103276.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

PM1, PM5, PM2, PM3_supporting, PS3_supporting, PP3, PP1

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024