NM_000238.4(KCNH2):c.-29GGCCCGCCC[1] AND Cardiac arrhythmia

Germline classification:: Benign/Likely benign (2 submissions)
Last evaluated:: Jun 26, 2018
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001842819.11

Allele description [Variation Report for NM_000238.4(KCNH2):c.-29GGCCCGCCC[1]]

NM_000238.4(KCNH2):c.-29GGCCCGCCC[1]

Gene:

KCNH2:potassium voltage-gated channel subfamily H member 2 [Gene - OMIM - HGNC]

Variant type:

Microsatellite

Cytogenetic location:

7q36.1

Genomic location:

Preferred name:

NM_000238.4(KCNH2):c.-29GGCCCGCCC[1]

HGVS:

NC_000007.14:g.150977925GGGCGGGCC[1]
NG_008916.1:g.4985GGCCCGCCC[1]
NM_000238.4:c.-29GGCCCGCCC[1]MANE SELECT
NM_172056.3:c.-29_-21GGCCCGCCC[1]
LRG_288t1:c.-29_-21GGCCCGCCC[1]
LRG_288t2:c.-29GGCCCGCCC[1]
LRG_288:g.4985GGCCCGCCC[1]
NC_000007.13:g.150675013GGGCGGGCC[1]
NM_000238.2:c.-20_-12delGGCCCGCCC
NM_000238.3:c.-20_-12del
NM_000238.3:c.-29_-21GGCCCGCCC[1]
NM_172056.2:c.-29GGCCCGCCC[1]
NR_176254.1:n.380_388GGCCCGCCC[1]

Links:

dbSNP: rs754605400

NCBI 1000 Genomes Browser:

rs754605400

Molecular consequence:

NM_000238.4:c.-29GGCCCGCCC[1] - 5 prime UTR variant - [Sequence Ontology: SO:0001623]

Condition(s)

Name:: Cardiac arrhythmia
Synonyms:: Cardiac rhythm disease
Identifiers:: EFO: EFO_0004269; MONDO: MONDO:0007263; MedGen: C0003811; Human Phenotype Ontology: HP:0011675

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000234052	GeneDx	criteria provided, single submitter (GeneDx Variant Classification (06012015))	Benign (Aug 23, 2014)	germline	clinical testing	Citation Link,
SCV001350185	Color Diagnostics, LLC DBA Color Health	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Jun 26, 2018)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000234052

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification (06012015))

Benign
(Aug 23, 2014)

germline

clinical testing

Citation Link,

SCV001350185

Color Diagnostics, LLC DBA Color Health

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Jun 26, 2018)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From GeneDx, SCV000234052.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The variant is found in LQT panel(s).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Color Diagnostics, LLC DBA Color Health, SCV001350185.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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