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NM_000261.2(MYOC):c.752T>C (p.Val251Ala) AND Glaucoma of childhood

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 20, 2022
Review status:
3 stars out of maximum of 4 stars
reviewed by expert panel
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001838863.5

Allele description [Variation Report for NM_000261.2(MYOC):c.752T>C (p.Val251Ala)]

NM_000261.2(MYOC):c.752T>C (p.Val251Ala)

Gene:
MYOC:myocilin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q24.3
Genomic location:
Preferred name:
NM_000261.2(MYOC):c.752T>C (p.Val251Ala)
Other names:
NM_000261.2:c.752T>C
HGVS:
  • NC_000001.11:g.171636688A>G
  • NG_008859.1:g.20946T>C
  • NM_000261.2:c.752T>CMANE SELECT
  • NP_000252.1:p.Val251Ala
  • NC_000001.10:g.171605828A>G
Protein change:
V251A
Links:
dbSNP: rs2102944863
NCBI 1000 Genomes Browser:
rs2102944863
Molecular consequence:
  • NM_000261.2:c.752T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Glaucoma of childhood
Synonyms:
Childhood glaucoma; Infantile glaucoma; Pediatric glaucoma; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0020367; MedGen: C2981140; Human Phenotype Ontology: HP:0001087

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002098418ClinGen Glaucoma Variant Curation Expert Panel
reviewed by expert panel

(ClinGen Glaucoma ACMG Specifications v1.1)
Likely pathogenic
(Feb 20, 2022)
germlinecuration

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedcuration

Details of each submission

From ClinGen Glaucoma Variant Curation Expert Panel, SCV002098418.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided

Description

The c.752T>C variant in MYOC is a missense variant predicted to cause substitution of Valine by Alanine at amino acid 251 (p.Val251Ala). This variant was not found in any population of gnomAD (v2.1.1), meeting the <= 0.0001 threshold set for PM2_Supporting in a population of at least 10,000 alleles. The REVEL score = 0.839, which met the >= 0.7 threshold for PP3, predicting a damaging effect on MYOC function. 17 segregations in 3 families with juvenile or primary open angle glaucoma (JOAG or POAG), have been reported (PMIDs: 32937162, 23517641 and Pasutto pers. comm.), which fulfilled PP1_Strong (>= 7 meioses in >1 family). 3 probands with JOAG or POAG have been reported carrying this variant (PMIDs: 32937162, 23517641 and Pasutto pers. comm.), which met PS4_Supporting (>= 2 probands). One of these was a confirmed de novo proband with JOAG (PMID: 23517641) (PS2_Moderate). In summary, this variant met the criteria to receive a score of 9 and to be classified as likely pathogenic (likely pathogenic classification range 6 to 9) for juvenile open angle glaucoma based on the ACMG/AMP criteria met, as specified by the ClinGen Glaucoma VCEP (v1, 12 Oct 2021): PP1_Strong, PS2_Moderate, PP3, PS4_Supporting, PM2_Supporting.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023