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NM_002617.4(PEX10):c.857C>T (p.Thr286Met) AND Zellweger spectrum disorders

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 12, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001836146.1

Allele description [Variation Report for NM_002617.4(PEX10):c.857C>T (p.Thr286Met)]

NM_002617.4(PEX10):c.857C>T (p.Thr286Met)

Gene:
PEX10:peroxisomal biogenesis factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.32
Genomic location:
Preferred name:
NM_002617.4(PEX10):c.857C>T (p.Thr286Met)
HGVS:
  • NC_000001.11:g.2406539G>A
  • NG_008342.1:g.11033C>T
  • NG_016128.1:g.19765G>A
  • NM_001374425.1:c.914C>T
  • NM_001374426.1:c.482C>T
  • NM_001374427.1:c.425C>T
  • NM_002617.4:c.857C>TMANE SELECT
  • NM_153818.2:c.917C>T
  • NP_001361354.1:p.Thr305Met
  • NP_001361355.1:p.Thr161Met
  • NP_001361356.1:p.Thr142Met
  • NP_002608.1:p.Thr286Met
  • NP_722540.1:p.Thr306Met
  • NC_000001.10:g.2337978G>A
  • NC_000001.10:g.2337978G>A
  • NM_153818.1:c.917C>T
  • NR_164636.1:n.972C>T
Protein change:
T142M
Links:
dbSNP: rs774205482
NCBI 1000 Genomes Browser:
rs774205482
Molecular consequence:
  • NM_001374425.1:c.914C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374426.1:c.482C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374427.1:c.425C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002617.4:c.857C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153818.2:c.917C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_164636.1:n.972C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Zellweger spectrum disorders (ZS)
Synonyms:
Zellweger syndrome; Zellweger Spectrum Disorder; Zellweger Spectrum
Identifiers:
MONDO: MONDO:0019609; MedGen: C0043459; Orphanet: 912

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002094104Natera, Inc.
no assertion criteria provided
Uncertain significance
(Oct 12, 2021)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Natera, Inc., SCV002094104.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Feb 7, 2023