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NM_014249.4(NR2E3):c.310C>T (p.Arg104Trp) AND Enhanced S-cone syndrome

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Mar 21, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001832466.3

Allele description [Variation Report for NM_014249.4(NR2E3):c.310C>T (p.Arg104Trp)]

NM_014249.4(NR2E3):c.310C>T (p.Arg104Trp)

Gene:
NR2E3:nuclear receptor subfamily 2 group E member 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q23
Genomic location:
Preferred name:
NM_014249.4(NR2E3):c.310C>T (p.Arg104Trp)
HGVS:
  • NC_000015.10:g.71811830C>T
  • NG_009113.2:g.6276C>T
  • NM_014249.4:c.310C>TMANE SELECT
  • NM_016346.4:c.310C>T
  • NP_055064.1:p.Arg104Trp
  • NP_057430.1:p.Arg104Trp
  • NC_000015.9:g.72104170C>T
  • NM_014249.3:c.310C>T
Protein change:
R104W
Links:
dbSNP: rs990307718
NCBI 1000 Genomes Browser:
rs990307718
Molecular consequence:
  • NM_014249.4:c.310C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016346.4:c.310C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Enhanced S-cone syndrome (ESCS)
Identifiers:
MONDO: MONDO:0100288; MedGen: C1849394; Orphanet: 53540; OMIM: 268100

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002085597Natera, Inc.
no assertion criteria provided
Pathogenic
(Aug 25, 2020) 		germlineclinical testing

SCV004191585Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Mar 21, 2024) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Natera, Inc., SCV002085597.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Baylor Genetics, SCV004191585.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024