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NM_006941.4(SOX10):c.378C>A (p.Tyr126Ter) AND Waardenburg syndrome type 4C

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 1, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001822888.10

Allele description [Variation Report for NM_006941.4(SOX10):c.378C>A (p.Tyr126Ter)]

NM_006941.4(SOX10):c.378C>A (p.Tyr126Ter)

Genes:
POLR2F:RNA polymerase II, I and III subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box transcription factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.4(SOX10):c.378C>A (p.Tyr126Ter)
HGVS:
  • NC_000022.11:g.37983407G>T
  • NG_007948.1:g.6126C>A
  • NG_148296.1:g.684G>T
  • NM_001301130.2:c.294-2747G>T
  • NM_001301131.2:c.293+16237G>T
  • NM_001363825.1:c.*38+11097G>T
  • NM_006941.4:c.378C>AMANE SELECT
  • NP_008872.1:p.Tyr126Ter
  • NP_008872.1:p.Tyr126Ter
  • LRG_271t1:c.378C>A
  • LRG_271:g.6126C>A
  • LRG_271p1:p.Tyr126Ter
  • NC_000022.10:g.38379414G>T
  • NM_006941.3:c.378C>A
Protein change:
Y126*
Links:
dbSNP: rs2145776981
NCBI 1000 Genomes Browser:
rs2145776981
Molecular consequence:
  • NM_001301130.2:c.294-2747G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301131.2:c.293+16237G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363825.1:c.*38+11097G>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006941.4:c.378C>A - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Waardenburg syndrome type 4C (WS4C)
Synonyms:
WAARDENBURG SYNDROME WITH HIRSCHSPRUNG DISEASE, TYPE 4C
Identifiers:
MONDO: MONDO:0013202; MedGen: C2750452; Orphanet: 897; OMIM: 613266

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001762461WangQJ Lab, Chinese People's Liberation Army General Hospital
no assertion criteria provided
Likely pathogenic
(Jul 1, 2021)
de novoclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From WangQJ Lab, Chinese People's Liberation Army General Hospital, SCV001762461.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024