NM_022089.4(ATP13A2):c.1243C>T (p.Arg415Trp) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 27, 2017
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001821804.4

Allele description [Variation Report for NM_022089.4(ATP13A2):c.1243C>T (p.Arg415Trp)]

NM_022089.4(ATP13A2):c.1243C>T (p.Arg415Trp)

Gene:

ATP13A2:ATPase cation transporting 13A2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.13

Genomic location:

Preferred name:

NM_022089.4(ATP13A2):c.1243C>T (p.Arg415Trp)

HGVS:

NC_000001.11:g.16996449G>A
NG_009054.1:g.20480C>T
NM_001141973.3:c.1228C>T
NM_001141974.3:c.1228C>T
NM_022089.4:c.1243C>TMANE SELECT
NP_001135445.1:p.Arg410Trp
NP_001135446.1:p.Arg410Trp
NP_071372.1:p.Arg415Trp
LRG_834t1:c.1243C>T
LRG_834:g.20480C>T
LRG_834p1:p.Arg415Trp
NC_000001.10:g.17322944G>A
NM_022089.2:c.1243C>T
NM_022089.3:c.1243C>T
NM_022089.4:c.1243C>T
p.Arg415Trp

Protein change:

R410W

Links:

dbSNP: rs768796427

NCBI 1000 Genomes Browser:

rs768796427

Molecular consequence:

NM_001141973.3:c.1228C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001141974.3:c.1228C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_022089.4:c.1243C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002067065	Genetic Services Laboratory, University of Chicago	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Sep 27, 2017)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002067065

Genetic Services Laboratory, University of Chicago

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Sep 27, 2017)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	no	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV002067065.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	no	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine