NM_000251.3(MSH2):c.-107C>A AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 19, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001818329.4

Allele description [Variation Report for NM_000251.3(MSH2):c.-107C>A]

NM_000251.3(MSH2):c.-107C>A

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.-107C>A

HGVS:

NC_000002.12:g.47403085C>A
NG_007110.2:g.4962C>A
NM_000251.3:c.-107C>AMANE SELECT
NM_001258281.1:c.-121C>A
LRG_218:g.4962C>A
NC_000002.11:g.47630224C>A
NM_000251.1:c.-107C>A

Links:

dbSNP: rs587782649

NCBI 1000 Genomes Browser:

rs587782649

Molecular consequence:

NM_001258281.1:c.-121C>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_000251.3:c.-107C>A - genic upstream transcript variant - [Sequence Ontology: SO:0002153]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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rps12 [Wikstroemia capitata]
rps12 [Wikstroemia capitata]
Gene ID:67789214

Gene
popset representative uid 212525894[word] (9)
Nucleotide
Homo sapiens jade family PHD finger 2 (JADE2), transcript variant 3, mRNA
Homo sapiens jade family PHD finger 2 (JADE2), transcript variant 3, mRNA
gi|1677498396|ref|NM_015288.6|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002071868	Genetic Services Laboratory, University of Chicago	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Nov 19, 2021)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002071868

Genetic Services Laboratory, University of Chicago

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Nov 19, 2021)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	no	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV002071868.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	no	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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