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NM_022552.5(DNMT3A):c.2645G>A (p.Arg882His) AND Abnormality of the nervous system

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 10, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001814155.1

Allele description [Variation Report for NM_022552.5(DNMT3A):c.2645G>A (p.Arg882His)]

NM_022552.5(DNMT3A):c.2645G>A (p.Arg882His)

Gene:
DNMT3A:DNA methyltransferase 3 alpha [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p23.3
Genomic location:
Preferred name:
NM_022552.5(DNMT3A):c.2645G>A (p.Arg882His)
HGVS:
  • NC_000002.12:g.25234373C>T
  • NG_029465.2:g.113218G>A
  • NM_001320893.1:c.2189G>A
  • NM_001375819.1:c.1976G>A
  • NM_022552.5:c.2645G>AMANE SELECT
  • NM_153759.3:c.2078G>A
  • NM_175629.2:c.2645G>A
  • NP_001307822.1:p.Arg730His
  • NP_001362748.1:p.Arg659His
  • NP_072046.2:p.Arg882His
  • NP_715640.2:p.Arg693His
  • NP_783328.1:p.Arg882His
  • LRG_459t2:c.2078G>A
  • LRG_459t4:c.2645G>A
  • LRG_459:g.113218G>A
  • LRG_459p2:p.Arg693His
  • LRG_459p4:p.Arg882His
  • NC_000002.11:g.25457242C>T
  • NM_022552.4:c.2645G>A
  • NM_022552.5:c.2645G>A
  • NM_175629.1:c.2645G>A
  • NR_135490.2:n.3075G>A
Protein change:
R659H; ARG882HIS
Links:
OMIM: 602769.0006; dbSNP: rs147001633
NCBI 1000 Genomes Browser:
rs147001633
Molecular consequence:
  • NM_001320893.1:c.2189G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001375819.1:c.1976G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_022552.5:c.2645G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_153759.3:c.2078G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_175629.2:c.2645G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_135490.2:n.3075G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Abnormality of the nervous system
Synonyms:
Congenital nervous system disorder
Identifiers:
MONDO: MONDO:0002320; MedGen: C0497552; Human Phenotype Ontology: HP:0000707

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001755336Kariminejad - Najmabadi Pathology & Genetics Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenic
(Jul 10, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Kariminejad - Najmabadi Pathology & Genetics Center, SCV001755336.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024