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NM_000243.3(MEFV):c.1894G>A (p.Gly632Ser) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 16, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001811392.14

Allele description [Variation Report for NM_000243.3(MEFV):c.1894G>A (p.Gly632Ser)]

NM_000243.3(MEFV):c.1894G>A (p.Gly632Ser)

Genes:
LOC126862264:CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:3293322-3294521 [Gene]
MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
NM_000243.3(MEFV):c.1894G>A (p.Gly632Ser)
HGVS:
  • NC_000016.10:g.3243593C>T
  • NG_007871.1:g.18035G>A
  • NM_000243.3:c.1894G>AMANE SELECT
  • NM_001198536.2:c.*98G>A
  • NP_000234.1:p.Gly632Ser
  • NP_000234.1:p.Gly632Ser
  • LRG_190t1:c.1894G>A
  • LRG_190:g.18035G>A
  • LRG_190p1:p.Gly632Ser
  • NC_000016.9:g.3293593C>T
  • NM_000243.1:c.1894G>A
  • NM_000243.2:c.1894G>A
  • O15553:p.Gly632Ser
Protein change:
G632S
Links:
UniProtKB: O15553#VAR_028335; dbSNP: rs104895128
NCBI 1000 Genomes Browser:
rs104895128
Molecular consequence:
  • NM_001198536.2:c.*98G>A - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000243.3:c.1894G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002049385ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2021)
Uncertain significance
(Aug 16, 2021)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV002049385.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The MEFV c.1894G>A; p.Gly632Ser variant (rs104895128) is reported in the literature in multiple individuals affected with familial Mediterranean fever (Goulielmos 2006, Oztuzcu 2014, Shinar 2007, Umeda 2017) and in an individual with adult-onset Still’s disease (Nonaka 2015). This variant is also reported in ClinVar (Variation ID: 97467). This variant is found in the general population with an overall allele frequency of 0.004% (10/274946 alleles) in the Genome Aggregation Database. The glycine at codon 632 is weakly conserved, but computational analyses are uncertain whether this variant is neutral or deleterious (REVEL: 0.255). Due to limited information, the clinical significance of the p.Gly632Ser variant is uncertain at this time. References: Goulielmos GN et al. Mutational analysis of the PRYSPRY domain of pyrin and implications for familial mediterranean fever (FMF). Biochem Biophys Res Commun. 2006 Jul 14;345(4):1326-32. PMID: 16730661. Nonaka F et al. Increased prevalence of MEFV exon 10 variants in Japanese patients with adult-onset Still's disease. Clin Exp Immunol. 2015 Mar;179(3):392-7. PMID: 25286988. Oztuzcu S et al. Screening of common and novel familial mediterranean fever mutations in south-east part of Turkey. Mol Biol Rep. 2014;41(4):2601-7. PMID: 24469716. Shinar Y et al. Unique spectrum of MEFV mutations in Iranian Jewish FMF patients--clinical and demographic significance. Rheumatology (Oxford). 2007 Nov;46(11):1718-22. PMID: 17938136. Umeda M et al. A Japanese familial Mediterranean fever patient with a rare G632S MEFV mutation in exon 10. Mod Rheumatol. 2017 Mar;27(2):378-379. PMID: 27310525.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024