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NM_001127511.3(APC):c.-181C>T AND not provided

Germline classification:
Benign (1 submission)
Last evaluated:
Aug 2, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001811056.13

Allele description [Variation Report for NM_001127511.3(APC):c.-181C>T]

NM_001127511.3(APC):c.-181C>T

Genes:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
LOC129994371:ATAC-STARR-seq lymphoblastoid active region 22910 [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_001127511.3(APC):c.-181C>T
HGVS:
  • NC_000005.10:g.112707537C>T
  • NG_008481.4:g.20017C>T
  • NG_173817.1:g.160C>T
  • NM_001127511.3:c.-181C>T
  • NM_001354895.2:c.-364C>T
  • NM_001354897.2:c.-181C>T
  • NM_001354902.2:c.-181C>T
  • NM_001407446.1:c.-181C>T
  • NM_001407447.1:c.-364C>T
  • NM_001407448.1:c.-131C>T
  • NM_001407450.1:c.-131C>T
  • NM_001407452.1:c.-364C>T
  • NM_001407453.1:c.-155C>T
  • NM_001407456.1:c.-364C>T
  • NM_001407457.1:c.-131C>T
  • NM_001407458.1:c.-131C>T
  • NM_001407460.1:c.-364C>T
  • NM_001407469.1:c.-364C>T
  • NM_001407470.1:c.-1399C>T
  • NM_001407472.1:c.-1399C>T
  • LRG_130t3:c.-364C>T
  • LRG_130:g.20017C>T
  • NC_000005.9:g.112043234C>T
  • NM_000038.5:c.-30407C>T
  • NM_001127511.1:c.-364C>T
  • NR_176365.1:n.40C>T
  • NR_176366.1:n.40C>T
Links:
dbSNP: rs115658307
NCBI 1000 Genomes Browser:
rs115658307
Molecular consequence:
  • NM_001127511.3:c.-181C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354895.2:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354897.2:c.-181C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001354902.2:c.-181C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407446.1:c.-181C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407447.1:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407448.1:c.-131C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407450.1:c.-131C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407452.1:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407453.1:c.-155C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407456.1:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407457.1:c.-131C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407458.1:c.-131C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407460.1:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407469.1:c.-364C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407470.1:c.-1399C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001407472.1:c.-1399C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NR_176365.1:n.40C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_176366.1:n.40C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001159748ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process)		Benign
(Aug 2, 2019) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV001159748.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024