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NM_000363.5(TNNI3):c.434G>A (p.Arg145Gln) AND Hypertrophic cardiomyopathy 7

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 3, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001807758.3

Allele description [Variation Report for NM_000363.5(TNNI3):c.434G>A (p.Arg145Gln)]

NM_000363.5(TNNI3):c.434G>A (p.Arg145Gln)

Gene:
TNNI3:troponin I3, cardiac type [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.42
Genomic location:
Preferred name:
NM_000363.5(TNNI3):c.434G>A (p.Arg145Gln)
Other names:
p.R145Q:CGG>CAG
HGVS:
  • NC_000019.10:g.55154145C>T
  • NG_007866.2:g.8588G>A
  • NG_011829.2:g.94G>A
  • NM_000363.5:c.434G>AMANE SELECT
  • NP_000354.4:p.Arg145Gln
  • LRG_432t1:c.434G>A
  • LRG_432:g.8588G>A
  • LRG_679:g.94G>A
  • NC_000019.9:g.55665513C>T
  • NM_000363.4:c.434G>A
  • c.434G>A
Protein change:
R145Q
Links:
dbSNP: rs397516349
NCBI 1000 Genomes Browser:
rs397516349
Molecular consequence:
  • NM_000363.5:c.434G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Hypertrophic cardiomyopathy 7
Synonyms:
Familial hypertrophic cardiomyopathy 7; CARDIOMYOPATHY, FAMILIAL HYPERTROPHIC, 7, MODIFIER OF; TNNI3-Related Familial Hypertrophic Cardiomyopathy
Identifiers:
MONDO: MONDO:0013369; MedGen: C1860752; OMIM: 613690

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV0020589113billion
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Jan 3, 2022)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Functional consequences of the mutations in human cardiac troponin I gene found in familial hypertrophic cardiomyopathy.

Takahashi-Yanaga F, Morimoto S, Harada K, Minakami R, Shiraishi F, Ohta M, Lu QW, Sasaguri T, Ohtsuki I.

J Mol Cell Cardiol. 2001 Dec;33(12):2095-107.

PubMed [citation]
PMID:
11735257

Genetics of hypertrophic cardiomyopathy in Norway.

Berge KE, Leren TP.

Clin Genet. 2014 Oct;86(4):355-60. doi: 10.1111/cge.12286. Epub 2013 Oct 23.

PubMed [citation]
PMID:
24111713
See all PubMed Citations (7)

Details of each submission

From 3billion, SCV002058911.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (7)

Description

The variant was co-segregated with Cardiomyopathy, hypertrophic, 7 in multiple affected family members with additional meioses (PMID: 9241277, 15607392, 23283745, 24111713, 25132132, PP1_S). Functional studies provide strong evidence of the variant having a damaging effect on the gene or gene product (PMID: 11735257, PS3_S). In silico tool predictions suggest damaging effect of the variant on gene or gene product (REVEL: 0.8, 3CNET: 0.979, PP3_P). A missense variant is a common mechanism associated with Cardiomyopathy (PP2_P). It is observed at an extremely low frequency in the gnomAD v2.1.1 dataset (total allele frequency: 0.000016, PM2_M). The variant is located in a well-established functional domain or exonic hotspot, where pathogenic variants have frequently reported (PM1_M). Different missense changes at the same codon have been reported as pathogenic/likely pathogenic with strong evidence (ClinVar ID: VCV000012419,VCV000012426, PM5_M). Therefore, this variant is classified as pathogenic according to the recommendation of ACMG/AMP guideline.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024