NM_213622.4(STAMBP):c.33C>T (p.Pro11=) AND Microcephaly-capillary malformation syndrome

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 21, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001804057.7

Allele description [Variation Report for NM_213622.4(STAMBP):c.33C>T (p.Pro11=)]

NM_213622.4(STAMBP):c.33C>T (p.Pro11=)

Genes:

LOC126806253:CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:74057585-74058784 [Gene]
STAMBP:STAM binding protein [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p13.1

Genomic location:

Preferred name:

NM_213622.4(STAMBP):c.33C>T (p.Pro11=)

HGVS:

NC_000002.12:g.73830889C>T
NG_033223.2:g.6979C>T
NM_001353967.2:c.33C>T
NM_001353968.2:c.33C>T
NM_001353969.2:c.33C>T
NM_001353970.2:c.33C>T
NM_001353971.2:c.-521C>T
NM_001353972.2:c.-203+1893C>T
NM_001353973.2:c.-521C>T
NM_001353974.2:c.-521C>T
NM_001353975.2:c.-521C>T
NM_001353976.2:c.-521C>T
NM_006463.6:c.33C>T
NM_201647.4:c.33C>T
NM_213622.4:c.33C>TMANE SELECT
NP_001340896.1:p.Pro11=
NP_001340897.1:p.Pro11=
NP_001340898.1:p.Pro11=
NP_001340899.1:p.Pro11=
NP_006454.1:p.Pro11=
NP_964010.1:p.Pro11=
NP_998787.1:p.Pro11=
NC_000002.11:g.74058016C>T
NC_000002.11:g.74058016C>T
NM_006463.4:c.33C>T
NR_148668.2:n.81C>T
NR_148669.2:n.81C>T
NR_148670.2:n.261C>T
NR_148671.2:n.595C>T

Links:

dbSNP: rs145371363

NCBI 1000 Genomes Browser:

rs145371363

Molecular consequence:

NM_001353971.2:c.-521C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353973.2:c.-521C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353974.2:c.-521C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353975.2:c.-521C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353976.2:c.-521C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353972.2:c.-203+1893C>T - intron variant - [Sequence Ontology: SO:0001627]
NR_148668.2:n.81C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148669.2:n.81C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148670.2:n.261C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148671.2:n.595C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NM_001353967.2:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001353968.2:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001353969.2:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001353970.2:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_006463.6:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_201647.4:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_213622.4:c.33C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Microcephaly-capillary malformation syndrome (MICCAP)
Identifiers:: MONDO: MONDO:0013659; MedGen: C3280296; Orphanet: 294016; OMIM: 614261

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002049687	ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	criteria provided, single submitter (ARUP Molecular Germline Variant Investigation Process 2021)	Likely benign (Sep 21, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002049687

ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories

criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2021)

Likely benign
(Sep 21, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV002049687.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 8, 2024

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