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NM_001083965.2(TDRKH):c.1003A>T (p.Lys335Ter) AND Azoospermia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 20, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001797577.1

Allele description [Variation Report for NM_001083965.2(TDRKH):c.1003A>T (p.Lys335Ter)]

NM_001083965.2(TDRKH):c.1003A>T (p.Lys335Ter)

Gene:
TDRKH:tudor and KH domain containing [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q21.3
Genomic location:
Preferred name:
NM_001083965.2(TDRKH):c.1003A>T (p.Lys335Ter)
HGVS:
  • NC_000001.11:g.151776480T>A
  • NM_001083963.1:c.1003A>T
  • NM_001083964.1:c.868A>T
  • NM_001083965.2:c.1003A>TMANE SELECT
  • NM_006862.4:c.1003A>T
  • NP_001077432.1:p.Lys335Ter
  • NP_001077433.1:p.Lys290Ter
  • NP_001077434.1:p.Lys335Ter
  • NP_006853.2:p.Lys335Ter
  • NC_000001.10:g.151748956T>A
Protein change:
K290*
Links:
dbSNP: rs2101585615
NCBI 1000 Genomes Browser:
rs2101585615
Molecular consequence:
  • NM_001083963.1:c.1003A>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001083964.1:c.868A>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001083965.2:c.1003A>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_006862.4:c.1003A>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Azoospermia
Identifiers:
MONDO: MONDO:0100459; MeSH: D053713; MedGen: C0004509; Human Phenotype Ontology: HP:0000027

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002039176Genetics of Infertility and Preimplantation Genetic Diagnosis, Centre Hospitalier Universitaire Grenoble Alpes
no assertion criteria provided
Pathogenic
(Dec 20, 2021)
biparentalcase-control

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedbiparentalyesnot providednot providednot providednot providednot providedcase-control

Details of each submission

From Genetics of Infertility and Preimplantation Genetic Diagnosis, Centre Hospitalier Universitaire Grenoble Alpes, SCV002039176.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcase-controlnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1biparentalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023