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NM_001134831.2(AHI1):c.1094dup (p.Met365fs) AND Joubert syndrome 3

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Feb 7, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001785863.4

Allele description [Variation Report for NM_001134831.2(AHI1):c.1094dup (p.Met365fs)]

NM_001134831.2(AHI1):c.1094dup (p.Met365fs)

Gene:
AHI1:Abelson helper integration site 1 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
6q23.3
Genomic location:
Preferred name:
NM_001134831.2(AHI1):c.1094dup (p.Met365fs)
HGVS:
  • NC_000006.12:g.135457551dup
  • NG_008643.2:g.45215dup
  • NM_001134830.2:c.1094dup
  • NM_001134831.2:c.1094dupMANE SELECT
  • NM_001134832.2:c.1094dup
  • NM_001350503.2:c.1094dup
  • NM_001350504.2:c.1094dup
  • NM_017651.5:c.1094dup
  • NP_001128302.1:p.Met365fs
  • NP_001128303.1:p.Met365fs
  • NP_001128304.1:p.Met365fs
  • NP_001337432.1:p.Met365fs
  • NP_001337433.1:p.Met365fs
  • NP_060121.3:p.Met365fs
  • NC_000006.11:g.135778689dup
  • NM_017651.4:c.1094dup
Protein change:
M365fs
Links:
dbSNP: rs2128081478
NCBI 1000 Genomes Browser:
rs2128081478
Molecular consequence:
  • NM_001134830.2:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001134831.2:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001134832.2:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001350503.2:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001350504.2:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_017651.5:c.1094dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Joubert syndrome 3 (JBTS3)
Synonyms:
Joubert syndrome with ocular anomalies; AHI1-related Ciliopathy
Identifiers:
MONDO: MONDO:0012078; MedGen: C1837713; Orphanet: 220493; OMIM: 608629

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002021206Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Feb 7, 2022) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV002021206.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024