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NM_000284.4(PDHA1):c.685A>T (p.Met229Leu) AND Pyruvate dehydrogenase E1-alpha deficiency

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 31, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001782589.4

Allele description [Variation Report for NM_000284.4(PDHA1):c.685A>T (p.Met229Leu)]

NM_000284.4(PDHA1):c.685A>T (p.Met229Leu)

Gene:
PDHA1:pyruvate dehydrogenase E1 subunit alpha 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp22.12
Genomic location:
Preferred name:
NM_000284.4(PDHA1):c.685A>T (p.Met229Leu)
HGVS:
  • NC_000023.11:g.19355430A>T
  • NG_016781.1:g.16538A>T
  • NM_000284.4:c.685A>TMANE SELECT
  • NM_001173454.2:c.799A>T
  • NM_001173455.2:c.706A>T
  • NM_001173456.2:c.592A>T
  • NP_000275.1:p.Met229Leu
  • NP_001166925.1:p.Met267Leu
  • NP_001166926.1:p.Met236Leu
  • NP_001166927.1:p.Met198Leu
  • NC_000023.10:g.19373548A>T
  • NM_000284.3:c.685A>T
Protein change:
M198L
Links:
dbSNP: rs2147180851
NCBI 1000 Genomes Browser:
rs2147180851
Molecular consequence:
  • NM_000284.4:c.685A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001173454.2:c.799A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001173455.2:c.706A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001173456.2:c.592A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Pyruvate dehydrogenase E1-alpha deficiency (PDHAD)
Synonyms:
X-linked Leigh syndrome; ATAXIA, INTERMITTENT, WITH PYRUVATE DEHYDROGENASE DEFICIENCY; ATAXIA WITH LACTIC ACIDOSIS I; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010717; MedGen: C1839413; OMIM: 312170

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002021649Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Oct 31, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV002021649.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024