NM_004643.4(PABPN1):c.18_26dup (p.Ala11_Gly12insAlaAlaAla) AND Oculopharyngeal muscular dystrophy

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Aug 8, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001780224.4

Allele description [Variation Report for NM_004643.4(PABPN1):c.18_26dup (p.Ala11_Gly12insAlaAlaAla)]

NM_004643.4(PABPN1):c.18_26dup (p.Ala11_Gly12insAlaAlaAla)

Genes:

BCL2L2-PABPN1:BCL2L2-PABPN1 readthrough [Gene - HGNC]
PABPN1:poly(A) binding protein nuclear 1 [Gene - OMIM - HGNC]

Variant type:

Duplication

Cytogenetic location:

14q11.2

Genomic location:

Preferred name:

NM_004643.4(PABPN1):c.18_26dup (p.Ala11_Gly12insAlaAlaAla)

HGVS:

NC_000014.9:g.23321487_23321495dup
NG_008239.1:g.6300_6308dup
NG_128768.1:g.378_386dup
NM_001199864.3:c.433-694_433-686dup
NM_001360551.3:c.18_26dup
NM_001387340.1:c.550-694_550-686dup
NM_001387341.1:c.529-694_529-686dup
NM_001387342.1:c.529-694_529-686dup
NM_001387343.1:c.529-694_529-686dup
NM_001387344.1:c.529-694_529-686dup
NM_001387345.1:c.433-694_433-686dup
NM_001387346.1:c.433-694_433-686dup
NM_004643.4:c.18_26dupMANE SELECT
NP_001347480.1:p.Ala11_Gly12insAlaAlaAla
NP_004634.1:p.Ala11_Gly12insAlaAlaAla
NC_000014.8:g.23790696_23790704dup
NM_004643.3:c.18_26dup

Links:

dbSNP: rs1888252890

NCBI 1000 Genomes Browser:

rs1888252890

Molecular consequence:

NM_001360551.3:c.18_26dup - inframe_insertion - [Sequence Ontology: SO:0001821]
NM_004643.4:c.18_26dup - inframe_insertion - [Sequence Ontology: SO:0001821]
NM_001199864.3:c.433-694_433-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387340.1:c.550-694_550-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387341.1:c.529-694_529-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387342.1:c.529-694_529-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387343.1:c.529-694_529-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387344.1:c.529-694_529-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387345.1:c.433-694_433-686dup - intron variant - [Sequence Ontology: SO:0001627]
NM_001387346.1:c.433-694_433-686dup - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Oculopharyngeal muscular dystrophy
Identifiers:: MONDO: MONDO:0008116; MedGen: C0270952; Orphanet: 270; OMIM: PS164300

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002020614	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Aug 8, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002020614

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Aug 8, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV002020614.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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