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NM_004360.5(CDH1):c.1670A>G (p.Lys557Arg) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 23, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001773651.3

Allele description [Variation Report for NM_004360.5(CDH1):c.1670A>G (p.Lys557Arg)]

NM_004360.5(CDH1):c.1670A>G (p.Lys557Arg)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.1670A>G (p.Lys557Arg)
HGVS:
  • NC_000016.10:g.68819384A>G
  • NG_008021.1:g.87093A>G
  • NM_001317184.2:c.1487A>G
  • NM_001317185.2:c.122A>G
  • NM_001317186.2:c.-254-2617A>G
  • NM_004360.5:c.1670A>GMANE SELECT
  • NP_001304113.1:p.Lys496Arg
  • NP_001304114.1:p.Lys41Arg
  • NP_004351.1:p.Lys557Arg
  • LRG_301t1:c.1670A>G
  • LRG_301:g.87093A>G
  • NC_000016.9:g.68853287A>G
  • NM_004360.3:c.1670A>G
Protein change:
K41R
Links:
dbSNP: rs1173188736
NCBI 1000 Genomes Browser:
rs1173188736
Molecular consequence:
  • NM_001317186.2:c.-254-2617A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001317184.2:c.1487A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.122A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.1670A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002004520GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(May 23, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002004520.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 15235021, 22850631, 33237286)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024