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NM_000116.5(TAFAZZIN):c.110-6C>G AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 16, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001772850.11

Allele description [Variation Report for NM_000116.5(TAFAZZIN):c.110-6C>G]

NM_000116.5(TAFAZZIN):c.110-6C>G

Genes:
DNASE1L1:deoxyribonuclease 1 like 1 [Gene - OMIM - HGNC]
TAFAZZIN:tafazzin, phospholipid-lysophospholipid transacylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_000116.5(TAFAZZIN):c.110-6C>G
HGVS:
  • NC_000023.11:g.154412080C>G
  • NG_009634.2:g.5546C>G
  • NG_012884.2:g.5009G>C
  • NG_203283.1:g.655C>G
  • NM_000116.5:c.110-6C>GMANE SELECT
  • NM_001009932.3:c.-620G>C
  • NM_001009933.3:c.-362G>C
  • NM_001009934.3:c.-277G>C
  • NM_001303465.2:c.164-6C>G
  • NM_001410698.1:c.164-6C>G
  • NM_181311.4:c.110-6C>G
  • NM_181312.4:c.110-6C>G
  • NM_181313.4:c.110-6C>G
  • LRG_131t1:c.110-6C>G
  • LRG_131:g.5546C>G
  • NC_000023.10:g.153640417C>G
Links:
dbSNP: rs782099193
NCBI 1000 Genomes Browser:
rs782099193
Molecular consequence:
  • NM_001009932.3:c.-620G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001009933.3:c.-362G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001009934.3:c.-277G>C - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000116.5:c.110-6C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001303465.2:c.164-6C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001410698.1:c.164-6C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181311.4:c.110-6C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181312.4:c.110-6C>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181313.4:c.110-6C>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001994339GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(Aug 16, 2019) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001994339.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Has not been previously published as pathogenic or benign to our knowledge; In silico analysis, which includes splice predictors and evolutionary conservation, suggests this variant may impact gene splicing; in the absence of RNA/functional studies, the actual effect of this sequence change is unknown

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024