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NM_001040142.2(SCN2A):c.745T>A (p.Ser249Thr) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 27, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001768169.2

Allele description [Variation Report for NM_001040142.2(SCN2A):c.745T>A (p.Ser249Thr)]

NM_001040142.2(SCN2A):c.745T>A (p.Ser249Thr)

Gene:
SCN2A:sodium voltage-gated channel alpha subunit 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q24.3
Genomic location:
Preferred name:
NM_001040142.2(SCN2A):c.745T>A (p.Ser249Thr)
HGVS:
  • NC_000002.12:g.165310370T>A
  • NG_008143.1:g.75969T>A
  • NM_001040142.2:c.745T>AMANE SELECT
  • NM_001040143.2:c.745T>A
  • NM_001371246.1:c.745T>A
  • NM_001371247.1:c.745T>A
  • NM_021007.3:c.745T>A
  • NP_001035232.1:p.Ser249Thr
  • NP_001035233.1:p.Ser249Thr
  • NP_001358175.1:p.Ser249Thr
  • NP_001358176.1:p.Ser249Thr
  • NP_066287.2:p.Ser249Thr
  • NC_000002.11:g.166166880T>A
  • NM_021007.2:c.745T>A
Protein change:
S249T
Links:
dbSNP: rs1210217208
NCBI 1000 Genomes Browser:
rs1210217208
Molecular consequence:
  • NM_001040142.2:c.745T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001040143.2:c.745T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371246.1:c.745T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371247.1:c.745T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_021007.3:c.745T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002008611GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(Sep 27, 2019) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002008611.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The majority of missense variants in this gene are considered pathogenic (Stenson et al., 2014); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously published as pathogenic or benign to our knowledge; This substitution is predicted to be within the intracellular loop between the S4 and S5 transmembrane segments of the first homologous domain

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024