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NM_031443.4(CCM2):c.30G>A (p.Lys10=) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Sep 1, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001759606.13

Allele description [Variation Report for NM_031443.4(CCM2):c.30G>A (p.Lys10=)]

NM_031443.4(CCM2):c.30G>A (p.Lys10=)

Genes:
LOC129998395:ATAC-STARR-seq lymphoblastoid silent region 18162 [Gene]
CCM2:CCM2 scaffold protein [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_031443.4(CCM2):c.30G>A (p.Lys10=)
HGVS:
  • NC_000007.14:g.45000363G>A
  • NG_016295.1:g.5176G>A
  • NM_001167934.2:c.30G>A
  • NM_001167935.2:c.30G>A
  • NM_001363458.2:c.30G>A
  • NM_001363459.2:c.30G>A
  • NM_031443.4:c.30G>AMANE SELECT
  • NP_001161406.1:p.Lys10=
  • NP_001161407.1:p.Lys10=
  • NP_001350387.1:p.Lys10=
  • NP_001350388.1:p.Lys10=
  • NP_113631.1:p.Lys10=
  • NP_113631.1:p.Lys10=
  • LRG_664t2:c.30G>A
  • LRG_664:g.5176G>A
  • LRG_664p2:p.Lys10=
  • NC_000007.13:g.45039962G>A
  • NM_031443.3:c.30G>A
Links:
dbSNP: rs1583819255
NCBI 1000 Genomes Browser:
rs1583819255
Molecular consequence:
  • NM_001167934.2:c.30G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001167935.2:c.30G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001363458.2:c.30G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001363459.2:c.30G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_031443.4:c.30G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001986155GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Jul 2, 2019)
germlineclinical testing

Citation Link,

SCV004032729CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Uncertain significance
(Sep 1, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001986155.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed in large population cohorts (Lek et al., 2016); In silico analysis, which includes splice predictors and evolutionary conservation, suggests this variant may impact gene splicing. In the absence of RNA/functional studies, the actual effect of this sequence change is unknown.; This variant is associated with the following publications: (PMID: 14624391, 23595507, 27153162)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004032729.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided

Description

CCM2: PS4:Moderate, PM2:Supporting, PP4, PS3:Supporting

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024