NM_004360.5(CDH1):c.2439+156_2439+170del AND not provided

Germline classification:: Benign (1 submission)
Last evaluated:: Aug 19, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001725034.2

Allele description [Variation Report for NM_004360.5(CDH1):c.2439+156_2439+170del]

NM_004360.5(CDH1):c.2439+156_2439+170del

Gene:

CDH1:cadherin 1 [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

16q22.1

Genomic location:

Preferred name:

NM_004360.5(CDH1):c.2439+156_2439+170del

HGVS:

NC_000016.10:g.68829953_68829967del
NG_008021.1:g.97662_97676del
NM_001317184.2:c.2256+156_2256+170del
NM_001317185.2:c.891+156_891+170del
NM_001317186.2:c.474+156_474+170del
NM_004360.5:c.2439+156_2439+170delMANE SELECT
LRG_301:g.97662_97676del
NC_000016.9:g.68863856_68863870del

Links:

dbSNP: rs761383817

NCBI 1000 Genomes Browser:

rs761383817

Molecular consequence:

NM_001317184.2:c.2256+156_2256+170del - intron variant - [Sequence Ontology: SO:0001627]
NM_001317185.2:c.891+156_891+170del - intron variant - [Sequence Ontology: SO:0001627]
NM_001317186.2:c.474+156_474+170del - intron variant - [Sequence Ontology: SO:0001627]
NM_004360.5:c.2439+156_2439+170del - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001950815	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Benign (Aug 19, 2019)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001950815

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Benign
(Aug 19, 2019)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001950815.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Dec 24, 2023

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