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NM_152564.5(VPS13B):c.11884C>G (p.Pro3962Ala) AND not provided

Germline classification:
Likely benign (2 submissions)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001706413.3

Allele description [Variation Report for NM_152564.5(VPS13B):c.11884C>G (p.Pro3962Ala)]

NM_152564.5(VPS13B):c.11884C>G (p.Pro3962Ala)

Gene:
VPS13B:vacuolar protein sorting 13 homolog B [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8q22.2
Genomic location:
Preferred name:
NM_152564.5(VPS13B):c.11884C>G (p.Pro3962Ala)
HGVS:
  • NC_000008.11:g.99875556C>G
  • NG_007098.2:g.867291C>G
  • NM_017890.5:c.11959C>G
  • NM_152564.5:c.11884C>GMANE SELECT
  • NP_060360.3:p.Pro3987Ala
  • NP_060360.3:p.Pro3987Ala
  • NP_689777.3:p.Pro3962Ala
  • LRG_351t1:c.11959C>G
  • LRG_351:g.867291C>G
  • LRG_351p1:p.Pro3987Ala
  • NC_000008.10:g.100887784C>G
  • NM_017890.3:c.11959C>G
  • NM_017890.4:c.11959C>G
Protein change:
P3962A
Links:
dbSNP: rs201483764
NCBI 1000 Genomes Browser:
rs201483764
Molecular consequence:
  • NM_017890.5:c.11959C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_152564.5:c.11884C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001922111Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001971648Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001922111.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001971648.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024