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NM_001243133.2(NLRP3):c.1302C>T (p.Ser434=) AND not provided

Germline classification:
Benign (4 submissions)
Last evaluated:
Nov 22, 2023
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001706344.21

Allele description [Variation Report for NM_001243133.2(NLRP3):c.1302C>T (p.Ser434=)]

NM_001243133.2(NLRP3):c.1302C>T (p.Ser434=)

Gene:
NLRP3:NLR family pyrin domain containing 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q44
Genomic location:
Preferred name:
NM_001243133.2(NLRP3):c.1302C>T (p.Ser434=)
HGVS:
  • NC_000001.11:g.247424751C>T
  • NG_007509.2:g.13579C>T
  • NM_001079821.3:c.1302C>T
  • NM_001127461.3:c.1302C>T
  • NM_001127462.3:c.1302C>T
  • NM_001243133.2:c.1302C>TMANE SELECT
  • NM_004895.5:c.1308C>T
  • NM_183395.3:c.1302C>T
  • NP_001073289.1:p.Ser436=
  • NP_001073289.2:p.Ser434=
  • NP_001120933.2:p.Ser434=
  • NP_001120934.2:p.Ser434=
  • NP_001230062.1:p.Ser434=
  • NP_004886.3:p.Ser436=
  • NP_004886.3:p.Ser436=
  • NP_899632.2:p.Ser434=
  • LRG_197t1:c.1308C>T
  • LRG_197:g.13579C>T
  • LRG_197p1:p.Ser436=
  • NC_000001.10:g.247588053C>T
  • NM_001079821.2:c.1308C>T
  • NM_001243133.2:c.1302C>T
  • NM_004895.4:c.1308C>T
  • p.Ser436Ser
Links:
dbSNP: rs34298354
NCBI 1000 Genomes Browser:
rs34298354
Molecular consequence:
  • NM_001079821.3:c.1302C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127461.3:c.1302C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001127462.3:c.1302C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001243133.2:c.1302C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_004895.5:c.1308C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_183395.3:c.1302C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000604549ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Benign
(Nov 22, 2023)
germlineclinical testing

Citation Link,

SCV001852103GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Mar 3, 2015)
germlineclinical testing

Citation Link,

SCV002074716GenomeConnect, ClinGen
no classification provided
not providedunknownphenotyping only

SCV005283576Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Benigngermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedphenotyping only
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing, not provided
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV000604549.10

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001852103.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From GenomeConnect, ClinGen, SCV002074716.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedphenotyping onlynot provided

Description

Variant interpreted as Benign and reported on 04-27-2020 by Lab or GTR ID 500031. GenomeConnect assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. GenomeConnect staff make no attempt to reinterpret the clinical significance of the variant. This variant was reported in an individual referred for clinical diagnostic genetic testing.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005283576.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024