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NM_001122955.4(BSCL2):c.861C>T (p.Leu287=) AND not provided

Germline classification:
Likely benign (3 submissions)
Last evaluated:
Apr 1, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001700048.13

Allele description [Variation Report for NM_001122955.4(BSCL2):c.861C>T (p.Leu287=)]

NM_001122955.4(BSCL2):c.861C>T (p.Leu287=)

Genes:
BSCL2:BSCL2 lipid droplet biogenesis associated, seipin [Gene - OMIM - HGNC]
HNRNPUL2-BSCL2:HNRNPUL2-BSCL2 readthrough (NMD candidate) [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q12.3
Genomic location:
Preferred name:
NM_001122955.4(BSCL2):c.861C>T (p.Leu287=)
HGVS:
  • NC_000011.10:g.62692378G>A
  • NG_008461.1:g.22197C>T
  • NG_033077.1:g.2522C>T
  • NM_001122955.4:c.861C>TMANE SELECT
  • NM_001130702.2:c.669C>T
  • NM_001386027.1:c.861C>T
  • NM_001386028.1:c.861C>T
  • NM_032667.6:c.669C>T
  • NP_001116427.1:p.Leu287=
  • NP_001124174.2:p.Leu223=
  • NP_001372956.1:p.Leu287=
  • NP_001372957.1:p.Leu287=
  • NP_116056.3:p.Leu223=
  • LRG_235t2:c.669C>T
  • LRG_235:g.22197C>T
  • LRG_235p2:p.Leu223=
  • NC_000011.9:g.62459850G>A
  • NM_001122955.3:c.861C>T
  • NR_037946.1:n.3381C>T
Links:
dbSNP: rs370926100
NCBI 1000 Genomes Browser:
rs370926100
Molecular consequence:
  • NR_037946.1:n.3381C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001122955.4:c.861C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001130702.2:c.669C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001386027.1:c.861C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001386028.1:c.861C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_032667.6:c.669C>T - synonymous variant - [Sequence Ontology: SO:0001819]
Observations:
3

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001926230Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001955076Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV004701537CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Apr 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes3not providednot providednot providednot providedclinical testing

Details of each submission

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001926230.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001955076.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004701537.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided3not providednot providedclinical testingnot provided

Description

BSCL2: BP4

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided3not providednot providednot provided

Last Updated: Oct 20, 2024