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NM_024747.6(HPS6):c.398C>T (p.Ala133Val) AND not specified

Germline classification:
Benign (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001699295.2

Allele description [Variation Report for NM_024747.6(HPS6):c.398C>T (p.Ala133Val)]

NM_024747.6(HPS6):c.398C>T (p.Ala133Val)

Gene:
HPS6:HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q24.32
Genomic location:
Preferred name:
NM_024747.6(HPS6):c.398C>T (p.Ala133Val)
HGVS:
  • NC_000010.11:g.102065872C>T
  • NG_012029.1:g.5483C>T
  • NM_024747.6:c.398C>TMANE SELECT
  • NP_079023.2:p.Ala133Val
  • NP_079023.2:p.Ala133Val
  • LRG_564t1:c.398C>T
  • LRG_564:g.5483C>T
  • LRG_564p1:p.Ala133Val
  • NC_000010.10:g.103825629C>T
  • NM_024747.5:c.398C>T
Protein change:
A133V
Links:
dbSNP: rs199816481
NCBI 1000 Genomes Browser:
rs199816481
Molecular consequence:
  • NM_024747.6:c.398C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001923959Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001923959.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024