NM_001048174.2(MUTYH):c.565C>T (p.Arg189Cys) AND not provided

Germline classification:
Uncertain significance (3 submissions)
Last evaluated:
Jan 11, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001698984.6

Allele description [Variation Report for NM_001048174.2(MUTYH):c.565C>T (p.Arg189Cys)]

NM_001048174.2(MUTYH):c.565C>T (p.Arg189Cys)

Gene:
MUTYH:mutY DNA glycosylase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p34.1
Genomic location:
Preferred name:
NM_001048174.2(MUTYH):c.565C>T (p.Arg189Cys)
HGVS:
  • NC_000001.11:g.45332615G>A
  • NG_008189.1:g.12856C>T
  • NM_001048171.2:c.565C>T
  • NM_001048172.2:c.568C>T
  • NM_001048173.2:c.565C>T
  • NM_001048174.2:c.565C>TMANE SELECT
  • NM_001128425.2:c.649C>T
  • NM_001293190.2:c.610C>T
  • NM_001293191.2:c.598C>T
  • NM_001293192.2:c.289C>T
  • NM_001293195.2:c.565C>T
  • NM_001293196.2:c.289C>T
  • NM_001350650.2:c.220C>T
  • NM_001350651.2:c.220C>T
  • NM_012222.3:c.640C>T
  • NP_001041636.1:p.Arg203Cys
  • NP_001041636.2:p.Arg189Cys
  • NP_001041637.1:p.Arg190Cys
  • NP_001041638.1:p.Arg189Cys
  • NP_001041639.1:p.Arg189Cys
  • NP_001121897.1:p.Arg217Cys
  • NP_001121897.1:p.Arg217Cys
  • NP_001280119.1:p.Arg204Cys
  • NP_001280120.1:p.Arg200Cys
  • NP_001280121.1:p.Arg97Cys
  • NP_001280124.1:p.Arg189Cys
  • NP_001280125.1:p.Arg97Cys
  • NP_001337579.1:p.Arg74Cys
  • NP_001337580.1:p.Arg74Cys
  • NP_036354.1:p.Arg214Cys
  • LRG_220t1:c.649C>T
  • LRG_220:g.12856C>T
  • LRG_220p1:p.Arg217Cys
  • NC_000001.10:g.45798287G>A
  • NM_001048171.1:c.607C>T
  • NM_001128425.1:c.649C>T
  • NR_146882.2:n.793C>T
  • NR_146883.2:n.642C>T
  • p.R217C
Protein change:
R189C
Links:
dbSNP: rs537292657
NCBI 1000 Genomes Browser:
rs537292657
Molecular consequence:
  • NM_001048171.2:c.565C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048172.2:c.568C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048173.2:c.565C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001048174.2:c.565C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001128425.2:c.649C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293190.2:c.610C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293191.2:c.598C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293192.2:c.289C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293195.2:c.565C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001293196.2:c.289C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350650.2:c.220C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001350651.2:c.220C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_012222.3:c.640C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_146882.2:n.793C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146883.2:n.642C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001922948Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Uncertain significancegermlineclinical testing

SCV001958898Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Uncertain significancegermlineclinical testing

SCV003921565GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Jan 11, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Clinical Genetics, Academic Medical Center - VKGL Data-share Consensus, SCV001922948.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ - VKGL Data-share Consensus, SCV001958898.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV003921565.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Observed in at least one individual with a personal history of colon cancer who underwent multi-gene panel testing (Yurgelun et al., 2017); This variant is associated with the following publications: (PMID: 17949294, 33471991, 28135145)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 23, 2024