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NM_000249.4(MLH1):c.1732-19T>A AND not provided

Germline classification:
Benign/Likely benign (4 submissions)
Last evaluated:
Apr 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001689577.15

Allele description [Variation Report for NM_000249.4(MLH1):c.1732-19T>A]

NM_000249.4(MLH1):c.1732-19T>A

Gene:
MLH1:mutL homolog 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.2
Genomic location:
Preferred name:
NM_000249.4(MLH1):c.1732-19T>A
HGVS:
  • NC_000003.12:g.37047500T>A
  • NG_007109.2:g.59151T>A
  • NM_000249.4:c.1732-19T>AMANE SELECT
  • NM_001167617.3:c.1438-19T>A
  • NM_001167618.3:c.1009-19T>A
  • NM_001167619.3:c.1009-19T>A
  • NM_001258271.2:c.1732-19T>A
  • NM_001258273.2:c.1009-19T>A
  • NM_001258274.3:c.1009-19T>A
  • NM_001354615.2:c.1009-19T>A
  • NM_001354616.2:c.1009-19T>A
  • NM_001354617.2:c.1009-19T>A
  • NM_001354618.2:c.1009-19T>A
  • NM_001354619.2:c.1009-19T>A
  • NM_001354620.2:c.1438-19T>A
  • NM_001354621.2:c.709-19T>A
  • NM_001354622.2:c.709-19T>A
  • NM_001354623.2:c.709-19T>A
  • NM_001354624.2:c.658-19T>A
  • NM_001354625.2:c.658-19T>A
  • NM_001354626.2:c.658-19T>A
  • NM_001354627.2:c.658-19T>A
  • NM_001354628.2:c.1732-19T>A
  • NM_001354629.2:c.1633-19T>A
  • NM_001354630.2:c.1732-1017T>A
  • LRG_216t1:c.1732-19T>A
  • LRG_216:g.59151T>A
  • NC_000003.11:g.37088991T>A
  • NM_000249.3:c.1732-19T>A
Links:
dbSNP: rs77120160
NCBI 1000 Genomes Browser:
rs77120160
Molecular consequence:
  • NM_000249.4:c.1732-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001167617.3:c.1438-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001167618.3:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001167619.3:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001258271.2:c.1732-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001258273.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001258274.3:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354615.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354616.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354617.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354618.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354619.2:c.1009-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354620.2:c.1438-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354621.2:c.709-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354622.2:c.709-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354623.2:c.709-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354624.2:c.658-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354625.2:c.658-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354626.2:c.658-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354627.2:c.658-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354628.2:c.1732-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354629.2:c.1633-19T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001354630.2:c.1732-1017T>A - intron variant - [Sequence Ontology: SO:0001627]
Observations:
5

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001905883Clinical Genetics Laboratory, Department of Pathology, Netherlands Cancer Institute - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV001915401GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Benign
(Mar 3, 2015) 		germlineclinical testing

Citation Link,

SCV004011453CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)		Benign
(Apr 1, 2024) 		germlineclinical testing

Citation Link,

SCV005258450Breakthrough Genomics, Breakthrough Genomics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benigngermlinenot provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes5not providednot providednot providednot providedclinical testing, not provided

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Clinical Genetics Laboratory, Department of Pathology, Netherlands Cancer Institute - VKGL Data-share Consensus, SCV001905883.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From GeneDx, SCV001915401.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 21056691)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004011453.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided5not providednot providedclinical testingnot provided

Description

MLH1: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided5not providednot providednot provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005258450.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providednot provided PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024